Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021280
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.40 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -1

Query: 440 TLIFNSPLYVAALCRHSVGRTT*DLTPTVSMGTLGLANAASSI-VTLTFSPLGNSNSDGN 264
           T+ F  PL+V     + + R     T ++ +GT  +  A+  + +TL     G +N+D  
Sbjct: 212 TISFYLPLFVMVFTYYKIYRAAVIQTKSLKLGTKQVLMASGELELTLRIHRGGGTNTDA- 270

Query: 263 RSA*QTSSHRP 231
           R   +T+S  P
Sbjct: 271 RHLFRTASSTP 281


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 610 ASSPYVVGYTKELPCGHQAVRMED 681
           A SPY     K  PC H  + ++D
Sbjct: 52  ACSPYFRELLKSTPCKHPVIVLQD 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,661
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)