Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021279
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    69   7e-13
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    33   0.069
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   7.9  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   7.9  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 28/50 (56%), Positives = 34/50 (68%)
 Frame = +2

Query: 359 FTGEINDKMKGLYRSKYIAPNGEERYAAVTQFEATDARRCFPCWDEPAIK 508
           FT  I+  M+G YRS Y+  +G  +Y A TQ E T ARR FPCWDEPA+K
Sbjct: 112 FTARISSGMEGFYRSSYVDSDGNTKYLATTQMEPTSARRAFPCWDEPALK 161



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 23/63 (36%), Positives = 37/63 (58%)
 Frame = +1

Query: 52  ENKPFQRLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVK 231
           ++K    LP NV P HY L L P+LE FT+ GK  V + ++  +N I L+ ++L +    
Sbjct: 13  DDKNRNLLPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAA 72

Query: 232 LQY 240
           L++
Sbjct: 73  LEW 75



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = +1

Query: 511 TFDITLQVPADRVALSNMPVKQEKIADNTRIIQFDTTPIMSTYLVAVVVGEYDYVE 678
           TF I +    +   LSNM   +E + D  +  +F  T  MSTYL+A +V E +YVE
Sbjct: 163 TFTIDITAKENYTILSNMNAVEETVKDGLKTARFAETCRMSTYLLAWIVAELEYVE 218



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +2

Query: 758 G*RVLPYYKDYFDIAYPLPKIDLIAIADFSAGAME 862
           G + L ++   F   YPLPK D++AI DF AGAME
Sbjct: 250 GAKTLDFFSGVFGEPYPLPKCDMVAIPDFEAGAME 284


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
 Frame = +1

Query: 1    YTARPTLAISKEKVT-MPENKPFQRLP---NNVIPKHYALELIPNLEKFTFKGK--TAVK 162
            Y    T  ++ E++  + E+   +RL    NN++  H  ++L+P L    F GK   +VK
Sbjct: 802  YVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHVIVDLLPKLAHLYFSGKFPDSVK 861

Query: 163  VSIVNPTNVIVLNSLDLDLKNVKLQYNDGSNQ 258
            +S V  + ++ L      +  ++ ++N  SNQ
Sbjct: 862  LSPVQQSVLLALGLQYKTIDTLEKEFNLPSNQ 893


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 624  WCCVKLYDPCIVCNLFLFYRH 562
            +CC+ ++  CIVC L L   H
Sbjct: 1267 FCCLSIHGLCIVCGLCLHVMH 1287


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 785  LYNKAKLVSHFKCKQPLFTFAYRSITLTRIPSLDF 681
            L N+ +  +    ++P+F F+  +  + RIP LDF
Sbjct: 1022 LRNEVRKAAAHAVQEPIFQFSVLARKIVRIPFLDF 1056


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 693 WDSSKGYTPVGKSKQG 740
           W S KGY P G SK G
Sbjct: 26  WWSRKGYHPTGSSKNG 41


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 333 LVKILRNKYLLFHQLYSILLTMELSLIRAIVILKFH 226
           L+K+L  K+LLFH   + L T   SL++A  +L FH
Sbjct: 29  LIKLLICKFLLFHDFGTALFT---SLVKA-SMLGFH 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,556,314
Number of Sequences: 5004
Number of extensions: 75170
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)