Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021279
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 82 5e-16
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 82 6e-16
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 82 6e-16
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 79 6e-15
01_05_0323 - 20934429-20934447,20934658-20934774,20934815-209349... 31 0.90
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 29 6.3
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/51 (70%), Positives = 40/51 (78%)
Frame = +2
Query: 356 EFTGEINDKMKGLYRSKYIAPNGEERYAAVTQFEATDARRCFPCWDEPAIK 508
+FTG +ND+M+G YRSKY GE R AVTQFEA DARRCFPCWDEPA K
Sbjct: 100 DFTGTLNDQMRGFYRSKY-EYKGESRNMAVTQFEAADARRCFPCWDEPAFK 149
Score = 75.4 bits (177), Expect = 6e-14
Identities = 35/76 (46%), Positives = 53/76 (69%)
Frame = +1
Query: 514 FDITLQVPADRVALSNMPVKQEKIADNTRIIQFDTTPIMSTYLVAVVVGEYDYVEKKSND 693
F +TL+VP++ VALSNMPV +E + + + ++ +P+MSTYLVA+VVG +DY+E + +
Sbjct: 152 FKLTLEVPSELVALSNMPVIKETVHGPLKTVYYEESPLMSTYLVAIVVGLFDYIEGSTLE 211
Query: 694 GILVRVILL*AKVNRG 741
G VRV K N+G
Sbjct: 212 GTKVRVYTQVGKSNQG 227
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 770 LPYYKDYFDIAYPLPKIDLIAIADFSAGAME 862
L +KDYF YPLPK+D++AI DF+AGAME
Sbjct: 238 LDLFKDYFATPYPLPKLDMVAIPDFAAGAME 268
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +1
Query: 70 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDL 213
RLP P Y L L P+L F G AV V++ PT +VLN+ +L
Sbjct: 13 RLPRCASPLSYDLRLRPDLAACAFSGSAAVAVAVSAPTRFLVLNAAEL 60
Score = 31.5 bits (68), Expect = 0.90
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 711 YTPVGKSKQGLFALEVADEFCLIIKITLILHTPCPK 818
YT VGKS QG FAL+VA + + K P PK
Sbjct: 218 YTQVGKSNQGKFALDVAVKSLDLFKDYFATPYPLPK 253
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 81.8 bits (193), Expect = 6e-16
Identities = 37/76 (48%), Positives = 56/76 (73%)
Frame = +1
Query: 514 FDITLQVPADRVALSNMPVKQEKIADNTRIIQFDTTPIMSTYLVAVVVGEYDYVEKKSND 693
F +TL+VP++ VALSNMP+ EKIA + ++++ +P+MSTYLVA+VVG +DY+E +++
Sbjct: 156 FKLTLEVPSELVALSNMPIVNEKIAGPIKTVEYEESPVMSTYLVAIVVGLFDYIEGVTSE 215
Query: 694 GILVRVILL*AKVNRG 741
G VRV K N+G
Sbjct: 216 GNKVRVYTQVGKSNQG 231
Score = 75.4 bits (177), Expect = 6e-14
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +2
Query: 359 FTGEINDKMKGLYRSKYIAPNGEERYAAVTQFEATDARRCFPCWDEPAIK 508
F G +ND+M+G YRSKY GE + AVTQFE+ DARRCFPCWDEP+ K
Sbjct: 105 FNGTLNDQMRGFYRSKY-EYKGETKNMAVTQFESVDARRCFPCWDEPSFK 153
Score = 48.8 bits (111), Expect = 6e-06
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +2
Query: 758 G*RVLPYYKDYFDIAYPLPKIDLIAIADFSAGAME 862
G + L YK++FD YPLPK+D++AI DF+ GAME
Sbjct: 238 GVKSLNLYKEFFDTPYPLPKLDMVAIPDFTNGAME 272
Score = 44.8 bits (101), Expect = 9e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 70 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQY 240
RLP P+ Y L L P+L F G+ +V V + PT +VLN+ DL + +++
Sbjct: 13 RLPRFAAPRRYELRLRPDLAACVFSGEASVAVDVSAPTRFLVLNAADLAVDRASIRF 69
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 711 YTPVGKSKQGLFALEVADEFCLIIKITLILHTPCPK 818
YT VGKS QG FAL+V + + K P PK
Sbjct: 222 YTQVGKSNQGKFALDVGVKSLNLYKEFFDTPYPLPK 257
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 81.8 bits (193), Expect = 6e-16
Identities = 39/66 (59%), Positives = 49/66 (74%)
Frame = +1
Query: 514 FDITLQVPADRVALSNMPVKQEKIADNTRIIQFDTTPIMSTYLVAVVVGEYDYVEKKSND 693
F ITL+VP++ VALSNMPV +EK+ + + F TPIMSTYLVAV+VG +DYVE + D
Sbjct: 165 FKITLEVPSETVALSNMPVVEEKVNGLIKAVYFQETPIMSTYLVAVIVGMFDYVEAFTTD 224
Query: 694 GILVRV 711
G VRV
Sbjct: 225 GTRVRV 230
Score = 75.4 bits (177), Expect = 6e-14
Identities = 33/52 (63%), Positives = 38/52 (73%)
Frame = +2
Query: 359 FTGEINDKMKGLYRSKYIAPNGEERYAAVTQFEATDARRCFPCWDEPAIKPL 514
F G +NDKM G YRS Y NGE++ AVTQFE DARRCFPCWDEP+ K +
Sbjct: 114 FKGTLNDKMHGFYRSVYEL-NGEKKNMAVTQFEPADARRCFPCWDEPSFKAI 164
Score = 48.4 bits (110), Expect = 7e-06
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +2
Query: 764 RVLPYYKDYFDIAYPLPKIDLIAIADFSAGAME 862
+ L +K+YF + YPLPK+D+IAI DF++GAME
Sbjct: 249 KTLVLFKEYFAVPYPLPKMDMIAIPDFASGAME 281
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +1
Query: 70 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQYNDG 249
RLP P+ Y L L+P+L+ F G V V + PT +VLN+ +L++ +Q+
Sbjct: 16 RLPGFAAPRRYDLRLVPDLDGCAFTGSVDVSVDVTAPTRFLVLNAAELEVSPGGVQFKPH 75
Query: 250 SNQR*FH 270
++ H
Sbjct: 76 GAEQELH 82
Score = 35.1 bits (77), Expect = 0.073
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +3
Query: 711 YTPVGKSKQGLFALEVADEFCLIIKITLILHTPCPK 818
YT VGKS QG FALEVA + ++ K + P PK
Sbjct: 231 YTQVGKSAQGKFALEVAVKTLVLFKEYFAVPYPLPK 266
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 78.6 bits (185), Expect = 6e-15
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +2
Query: 356 EFTGEINDKMKGLYRSKYIAPNGEERYAAVTQFEATDARRCFPCWDEPAIK 508
+F G +ND+M+G YRSKY GE + AVTQFEA DARRCFPCWDEPA K
Sbjct: 110 DFNGTLNDQMRGFYRSKY-EYKGETKNMAVTQFEAVDARRCFPCWDEPAFK 159
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/76 (50%), Positives = 54/76 (71%)
Frame = +1
Query: 514 FDITLQVPADRVALSNMPVKQEKIADNTRIIQFDTTPIMSTYLVAVVVGEYDYVEKKSND 693
F +TL+VP++ VALSNMPV E IA + I ++ +P+MSTYLVA+VVG +DYVE +++
Sbjct: 162 FKLTLEVPSELVALSNMPVACETIAGPIKTIHYEESPLMSTYLVAIVVGLFDYVEGVTSE 221
Query: 694 GILVRVILL*AKVNRG 741
G VRV K ++G
Sbjct: 222 GNKVRVYTQVGKSSQG 237
Score = 56.0 bits (129), Expect = 4e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 758 G*RVLPYYKDYFDIAYPLPKIDLIAIADFSAGAME 862
G + L +YKDYFD YPLPK+D++AI DF+AGAME
Sbjct: 244 GVKSLNFYKDYFDTPYPLPKLDMVAIPDFAAGAME 278
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 70 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQY 240
RLP P+ Y L L P+L+ F G +V V + PT +VLN+ DL + +++
Sbjct: 19 RLPRFAAPRRYELRLRPDLDACVFTGDASVVVDVSAPTRFLVLNAADLAVDRASIRF 75
>01_05_0323 -
20934429-20934447,20934658-20934774,20934815-20934964,
20935578-20935828,20936403-20936449,20936852-20936976,
20937039-20937154,20937194-20937284,20937772-20937893,
20938667-20938894,20938990-20939221,20941598-20941797
Length = 565
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/82 (21%), Positives = 41/82 (50%)
Frame = -2
Query: 415 SNVFTAVQAFHFVIYFTCKLRIKRRSPSSKDSEK*ILAVSSVVLNSTDDGIIAD*SHRYT 236
S +F +Q FH ++ + C L ++R SP+ + + +L+++ A + +Y+
Sbjct: 309 SKMFAGLQPFHLLVPYPCHLIVERLSPNVLKTNSVVDPSEPKILDASSS---ASRTGQYS 365
Query: 235 EVSHFSNPSLSYSILSHSLD*Q 170
+H S+ +L+ + L+ Q
Sbjct: 366 ATTHLSDNTLNAKCYLNKLESQ 387
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 162 FHRSFSLESKFFQIWNQFQCIMLRNHIIR 76
F RS ++ + + WN C++L H+IR
Sbjct: 699 FTRSVQIDPENGEAWNNIACLLLSRHMIR 727
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,437,235
Number of Sequences: 37544
Number of extensions: 423534
Number of successful extensions: 1020
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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