Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021279
         (863 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    25   2.2  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    21   5.4  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.1  

>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 553 KQHDQPELVRLYQKWFNCRFIPARETSSCIC 461
           +Q    EL RL + +     +PA++  S +C
Sbjct: 34  EQESHAELFRLVKTYLKLELVPAKDFPSAVC 64


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 21.0 bits (42), Expect(2) = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 706 LLESHH*ISFPHN-HIHQQQQ 647
           L+E ++ ++  H+ H HQQQQ
Sbjct: 726 LIEENNMLNMTHHQHQHQQQQ 746



 Score = 21.0 bits (42), Expect(2) = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 673 HNHIHQQQQPLNMLTL 626
           H+H+ QQQQ +   TL
Sbjct: 787 HHHLQQQQQIVGKNTL 802


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 197  NTITFVGLTIDTFTAVFPLKVN 132
            NT   +G+T D +++ +P++ N
Sbjct: 3103 NTSNIIGITEDHYSSCYPIEYN 3124


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,083
Number of Sequences: 2352
Number of extensions: 18712
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92199573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)