Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021279
         (863 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    93   3e-19
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    31   1.3  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    30   2.3  
At1g63770.2 68414.m07216 peptidase M1 family protein similar to ...    29   3.0  
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ...    29   3.0  
At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00...    29   4.0  
At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putat...    29   4.0  
At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi...    29   5.3  
At4g10845.1 68417.m01766 hypothetical protein                          29   5.3  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 43/77 (55%), Positives = 57/77 (74%)
 Frame = +1

Query: 511 TFDITLQVPADRVALSNMPVKQEKIADNTRIIQFDTTPIMSTYLVAVVVGEYDYVEKKSN 690
           TF ITL+VP D VALSNMP+ +EK+  N +I+ +  +PIMSTYLVA+VVG +DYVE  ++
Sbjct: 157 TFKITLEVPTDLVALSNMPIMEEKVNGNLKIVSYQESPIMSTYLVAIVVGLFDYVEDHTS 216

Query: 691 DGILVRVILL*AKVNRG 741
           DGI VRV     K ++G
Sbjct: 217 DGIKVRVYCQVGKADQG 233



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 35/50 (70%), Positives = 38/50 (76%)
 Frame = +2

Query: 359 FTGEINDKMKGLYRSKYIAPNGEERYAAVTQFEATDARRCFPCWDEPAIK 508
           F G +NDKMKG YRS Y   NGE++  AVTQFE  DARRCFPCWDEPA K
Sbjct: 107 FNGVLNDKMKGFYRSTY-EHNGEKKNMAVTQFEPADARRCFPCWDEPACK 155



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +2

Query: 758 G*RVLPYYKDYFDIAYPLPKIDLIAIADFSAGAME 862
           G + L  +K+YF + YPLPK+D+IAI DF+AGAME
Sbjct: 240 GAKTLDLFKEYFAVPYPLPKMDMIAIPDFAAGAME 274



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 26/72 (36%), Positives = 38/72 (52%)
 Frame = +1

Query: 46  MPENKPFQRLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKN 225
           M + K   RLP   +PK Y L L P+L   TF G  A+ + IV  T  IVLN+ DL + +
Sbjct: 1   MDQFKGEPRLPKFAVPKRYDLRLNPDLIACTFTGTVAIDLDIVADTRFIVLNAADLSVND 60

Query: 226 VKLQYNDGSNQR 261
             + +   S+ +
Sbjct: 61  ASVSFTPPSSSK 72


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 22  AISKEKVTMPENKPFQRLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTN 186
           ++ +E++  P+ +   R PNN  P+     +   L +F F G+T    ++ + T+
Sbjct: 327 SLLQERLHTPKRRKTSRWPNNGFPEQKGSSVSAQLRRFPFNGQTMSPFAVKSGTH 381


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 543 ISRNL*GYIKSGLIAGSSQQGKHRRASVASNWVTAAYRSSPLGAMYL 403
           ++ +L G+IKS +   S  Q ++     A  W T+ Y S    ++Y+
Sbjct: 507 LANSLAGFIKSSIFIASIDQEQNEARFCALRWATSLYNSHHCPSLYI 553


>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 945

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 782 KDYFDIAYPLPKIDLIAIADFSAGAME 862
           +D F + Y L   +++A+ DF+ GAME
Sbjct: 334 EDVFGLEYDLDLFNIVAVPDFNMGAME 360


>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 918

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 782 KDYFDIAYPLPKIDLIAIADFSAGAME 862
           +D F + Y L   +++A+ DF+ GAME
Sbjct: 334 EDVFGLEYDLDLFNIVAVPDFNMGAME 360


>At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 464

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 73  LPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLD 216
           + N +IP  Y L  +PN+E F + G   V V      N+I+L  + LD
Sbjct: 224 IDNCIIPTMYCLLNLPNIEIFKYSGN--VIVFDFQKVNMILLKEVYLD 269


>At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putative
           similar to SIAH2 protein [Brassica napus var. napus]
           GI:7657878; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 329

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 666 IFTNNNSH*IC*HYWCCVKLYDPCIVCNL 580
           IF  NN H  C  + CC+KL   C  C L
Sbjct: 97  IFQCNNGHLAC--FLCCIKLKKRCSFCKL 123


>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 722

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +3

Query: 390 ACTAVNTLLPMEKNDMRLSPNLKRQMHDDVSLAGMNLQLNHF*YNLTSS 536
           A TA NT+L  EK     S N  +Q+H  +    +N +LN F +NL+ S
Sbjct: 8   ASTAANTIL--EKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVS 54


>At4g10845.1 68417.m01766 hypothetical protein
          Length = 164

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
 Frame = -2

Query: 529 VRLYQKWFNCRFIPARETSSCICRFKLGDSRISFFSIGSNVFTAVQAFHFVIYFTCKLRI 350
           V L+  W     I  +  S C C  +      SF+ + S V +     + +  F   LR+
Sbjct: 40  VNLFTFWTEETLIEDKSLSFCTCNGERWRRLFSFYKVSSRVTS-----YLIYLFVHGLRV 94

Query: 349 KRRSPSSKDS--EK*ILAVSSVVLNSTDDGIIAD*SHRYTE-VSHFSNPSLSY-SILSHS 182
               P  K +   K  + VS+V   S    +I+D S   +E V H  N  L +  I+  S
Sbjct: 95  NTNIPQQKSTCFSKINMNVSNVAYMSYTVMLISDISQWSSEMVVHHLNGVLKWLCIIFLS 154

Query: 181 LD*QSILS 158
              Q ILS
Sbjct: 155 AVFQGILS 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,401
Number of Sequences: 28952
Number of extensions: 371902
Number of successful extensions: 986
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)