Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021278
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 106 2e-23
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 99 2e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 99 2e-21
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 78 5e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 77 2e-14
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 75 5e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 75 6e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 71 1e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 7e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 61 6e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 57 1e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 56 2e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 55 6e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 54 1e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 54 1e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 54 1e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 53 2e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 52 5e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 1e-06
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 50 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 6e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 48 6e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 3e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 46 3e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 5e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 5e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 6e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 8e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 43 2e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 41 7e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 0.001
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.001
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.002
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.003
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.003
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.004
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 38 0.005
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 38 0.005
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 38 0.007
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.009
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 38 0.009
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 37 0.012
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 37 0.012
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.012
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.048
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.064
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.085
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 30 1.4
At2g25460.1 68415.m03049 expressed protein 30 1.4
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 2.4
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 2.4
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 2.4
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 2.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.6
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.6
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.6
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 28 7.3
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.3
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.3
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.3
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.7
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa... 27 9.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 106 bits (254), Expect = 2e-23
Identities = 46/70 (65%), Positives = 58/70 (82%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIK 202
Query: 695 NTCVFGGAPK 724
TC++GG PK
Sbjct: 203 TTCIYGGVPK 212
Score = 101 bits (243), Expect = 4e-22
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLV 510
G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLI 140
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 99 bits (238), Expect = 2e-21
Identities = 44/70 (62%), Positives = 58/70 (82%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 695 NTCVFGGAPK 724
+TC++GGAPK
Sbjct: 269 STCIYGGAPK 278
Score = 94.3 bits (224), Expect = 7e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 99 bits (238), Expect = 2e-21
Identities = 44/70 (62%), Positives = 58/70 (82%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 695 NTCVFGGAPK 724
+TC++GGAPK
Sbjct: 269 STCIYGGAPK 278
Score = 94.3 bits (224), Expect = 7e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIR 632
Query: 695 NTCVFGGA 718
V+GG+
Sbjct: 633 CVPVYGGS 640
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/72 (50%), Positives = 49/72 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLR 331
Query: 695 NTCVFGGAPKRE 730
+ V+GG K E
Sbjct: 332 VSAVYGGMSKHE 343
Score = 72.9 bits (171), Expect = 2e-13
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/68 (50%), Positives = 45/68 (66%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGII 499
Query: 695 NTCVFGGA 718
V+GG+
Sbjct: 500 CVPVYGGS 507
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 695 NTCVFGGAPK 724
TC++GGAPK
Sbjct: 261 CTCLYGGAPK 270
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA 513
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 695 NTCVFGGAPK 724
TC++GGAPK
Sbjct: 261 CTCLYGGAPK 270
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA 513
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 695 NTCVFGGAPK 724
TC++GGAPK
Sbjct: 261 CTCLYGGAPK 270
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA 513
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 74.5 bits (175), Expect = 6e-14
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRIS 537
Query: 695 NTCVFGGAPK 724
TC++GGAPK
Sbjct: 538 CTCLYGGAPK 547
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +1
Query: 268 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ G+ PTPIQAQ WPIA+ +++VA
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/70 (50%), Positives = 46/70 (65%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKIS 331
Query: 695 NTCVFGGAPK 724
C++GGAPK
Sbjct: 332 CACLYGGAPK 341
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V + G+ P+PIQAQ WPIAM +++VA
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTS 685
++TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL 416
Query: 686 YVRNTCVFGG 715
R T + GG
Sbjct: 417 GFRVTSIVGG 426
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 682
++TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEP 217
Query: 683 SYVRNTCVFGGAPK 724
+++ CV+GG+ K
Sbjct: 218 CGLKSICVYGGSSK 231
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 492
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 493 SGKNLV 510
G++L+
Sbjct: 150 DGRDLI 155
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = +1
Query: 244 GFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 423
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 673
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSY 262
Query: 680 TSYVRNTCVFGGAP 721
+ V+ +GG P
Sbjct: 263 QTGVKVVVAYGGTP 276
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 432
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 54.8 bits (126), Expect = 6e-08
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY 249
Query: 680 TSYVRNTCVFGGAP 721
+ V+ +GG P
Sbjct: 250 QTGVKVVVAYGGTP 263
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVA 513
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 680 TSYVRNTCVFGGAP 721
+ V+ +GG P
Sbjct: 255 QTGVKVVVAYGGTP 268
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 680 TSYVRNTCVFGGAP 721
+ V+ +GG P
Sbjct: 255 QTGVKVVVAYGGTP 268
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
R++TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 689 VRNT-CVFGGAP 721
+T C++GG P
Sbjct: 204 SLDTICLYGGTP 215
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 676
R++TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 677 HTSYVRNTCVFGG 715
+ + + C++GG
Sbjct: 199 GSLGLSSCCLYGG 211
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
S TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 680 TSYVRNTCVFGGA 718
+ R+ V GG+
Sbjct: 215 HARFRSILVSGGS 227
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 673
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/77 (29%), Positives = 44/77 (57%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 459
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 460 PIQAQGWPIAMSGKNLV 510
PIQ QG P+ ++G++++
Sbjct: 171 PIQVQGLPVILAGRDMI 187
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 51.6 bits (118), Expect = 5e-07
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
R++TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 689 VRNT-CVFGGAP 721
+T C++GG P
Sbjct: 216 SLDTICLYGGTP 227
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 694
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 695 NTCVFGGAPK 724
V GG K
Sbjct: 136 PGYVMGGEKK 145
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPIAMSGKN-LVA*PNG 525
MG++ PT +QAQ P+ +SG++ LV P G
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTG 77
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 676
R++TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 677 HTSYVRNTCVFGG 715
Y+ CV+GG
Sbjct: 203 SAPYLSTVCVYGG 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 685
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 213
Query: 686 YVRNTCVFGGAP 721
+ V GG P
Sbjct: 214 PFKTALVVGGDP 225
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 484 IAMSGKNLVA 513
A++GK+L+A
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 685
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 76
Query: 686 YVRNTCVFGGAP 721
+ V GG P
Sbjct: 77 PFKTALVVGGDP 88
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 649
+++TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
Query: 695 NTCVFGG 715
+ + GG
Sbjct: 129 VSLLVGG 135
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 652
R++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 499 KNLVA 513
K++VA
Sbjct: 84 KDVVA 88
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 688
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 689 VRNTCVFGG 715
V + + GG
Sbjct: 120 VNSVLLVGG 128
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 352 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
Score = 44.8 bits (101), Expect = 6e-05
Identities = 30/84 (35%), Positives = 42/84 (50%)
Frame = +2
Query: 479 GR*LCLERI*WRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 658
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 659 VAADFGHTSYVRNTCVFGGAPKRE 730
+ + + ++ + GG RE
Sbjct: 257 MIQNLAQFTDIKCGLIVGGLSVRE 280
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 501
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 502 NLVA 513
A
Sbjct: 180 ECFA 183
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 649
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/67 (41%), Positives = 38/67 (56%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
+QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 102 AQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLR 156
Query: 695 NTCVFGG 715
+ + GG
Sbjct: 157 CSVIVGG 163
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 649
+++TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
++TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 133 ARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQ 190
Query: 692 RNTCVFGGAPKR 727
+ V GG +R
Sbjct: 191 TVSMVIGGNNRR 202
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 649
+++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 688
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 689 VRNTCVFGG 715
V + + GG
Sbjct: 120 VNSVLLVGG 128
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 652
+++TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
++TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 198 ARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
MG+ T IQA+ P M G++++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +2
Query: 488 LCLERI*WRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 649
LC I ++TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 661
S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 692 RNTCVFGGAPKRE 730
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + G+ G++ P+PIQ + PIA++G++++A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 692 RNTCVFGGAPKRE 730
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + G+ G++ P+PIQ + PIA++G++++A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 652
+++TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 518 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 652
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 730
ALVLAPTRELAQQI++V G V+ GG RE
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVRE 151
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 730
ALVLAPTRELAQQI++V G V+ GG RE
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVRE 149
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADF 673
+QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 53 AQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL 112
Query: 674 GHTSYVRNTCVFGGAPKRE 730
G +R + GG + +
Sbjct: 113 GADISLRCAVLVGGIDRMQ 131
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 367 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
+QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 730
ALVLAPTRELAQQI++V G V+ GG RE
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE 149
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 692 RNTCVFGGAPKRE 730
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 692 RNTCVFGGAPKRE 730
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 692 RNTCVFGGAPKRE 730
GG R+
Sbjct: 252 EVMVTTGGTSLRD 264
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.1 bits (77), Expect = 0.048
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 379 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +2
Query: 512 RSQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 682
++Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 683 SYVRNTCVFG 712
+ + C+ G
Sbjct: 118 NIQAHACIGG 127
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 34.3 bits (75), Expect = 0.085
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 652
+S TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGA 718
AL+L+PTRELA Q ++ G H + + C+ G +
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 200 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 84
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQ 649
++TGSGKTLA+ LP + + + DG + AL++ PTRELA Q
Sbjct: 235 AETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQ 294
Query: 650 IQQVAADFGHTSYVRNTCVFGG 715
+ + + V+ + GG
Sbjct: 295 VTEHLENAAKNLSVKVVPIVGG 316
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 651 ICCANSLVGAKTKAIGPSPLRI 586
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 227
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASNC 564
+K P P+ ++ + + + P G+R+NVG+ L S C
Sbjct: 30 LKQFSVSSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPC 74
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 457 TPIQAQGWPIAMS 495
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 457 TPIQAQGWPIAMS 495
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 457 TPIQAQGWPIAMS 495
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 81 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 227
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 155
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 275 FLLKGWSKQNPNLGV----ACSALQRILFSHQSLQILQIYCHRC 156
FLL+ SK NPNL V S L I+ L + +++ +RC
Sbjct: 33 FLLRLTSKSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYRC 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,611
Number of Sequences: 28952
Number of extensions: 335559
Number of successful extensions: 1099
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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