Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021277
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 29 0.79
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 1.0
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 29 1.0
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.8
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 26 5.6
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 5.6
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 26 7.4
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 26 7.4
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 26 7.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 7.4
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.7
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 239 RQGHQIEPCGHLLCTPCLTAW 301
+QG I CGHL C+ CL AW
Sbjct: 1100 KQGF-ITTCGHLYCSFCLEAW 1119
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 254 IEPCGHLLCTPCLT 295
I PCGH LC CLT
Sbjct: 759 IVPCGHFLCRECLT 772
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +1
Query: 292 HCVAN*F-RRQGCPFCRAEIKGTEQVVVDAFVPP--RPPNTTSEAKNPK--PTVKAV 447
HC+ N R+Q CP CR + G + P R ++ NP+ PT AV
Sbjct: 335 HCLRNWLERQQTCPICRRSVIGNQSSPTGIPASPNVRATQIATQVPNPQNTPTTTAV 391
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 254 IEPCGHLLCTPCL 292
+ PCGH C PCL
Sbjct: 181 VSPCGHTFCGPCL 193
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 657 FLTISIITHSVTRIYILHYVHSIHRCLFFIYLNVHI 764
FL++ I V ++L H+ FFI+L +HI
Sbjct: 62 FLSVERIVRDVNYGFLLRAFHANGASFFFIFLYLHI 97
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 90 LYPDGRDTNPDLSSAIISPAEDHITVTQEQYELYCEMGSTFQLCKICAENDKDIR*SRAG 269
+ P DT+P +SSAIIS + +V E + GS +L + ++ A
Sbjct: 651 ILPKAADTSPGVSSAIISALGELASVEGEDMPVDVR-GSFMKLILVNLQDQSSTLKRLAS 709
Query: 270 ISCAR 284
+ C R
Sbjct: 710 LKCLR 714
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 236 KRQGHQIEPCGHLLCTPC 289
K GH + C H+LCT C
Sbjct: 93 KGNGHISKDCPHVLCTTC 110
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 681 HSVTRIYILHYVHSIHRCLFFIY 749
+S T+I I YV ++ CL F+Y
Sbjct: 134 YSGTKILIEEYVREVNNCLEFLY 156
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 407 VVLGGRGGTNASTTTCSV 354
+ +GG+GG +TT+CS+
Sbjct: 22 IFVGGKGGVGKTTTSCSL 39
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 114 NPDLSSAIISPAEDHITVTQEQYELY 191
NPD+SS+ +SP ED E+ L+
Sbjct: 442 NPDISSSPLSPTEDLFPNDPEEENLF 467
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 75 REGFYLYPDGRDTNPDLSSAIISPAEDHIT 164
R LY DT PDLSSAI S + +I+
Sbjct: 37 RREISLYKRATDTFPDLSSAIASTSYYNIS 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,252
Number of Sequences: 5004
Number of extensions: 57580
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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