Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021277
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0413 - 3679887-3681254 32 0.63
06_03_0341 + 19716846-19717349 29 3.3
05_05_0173 + 22956927-22958615 29 3.3
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 29 3.3
01_06_1224 - 35508842-35510404 29 3.3
12_02_1243 + 27300978-27301682 29 4.4
01_06_0829 - 32270189-32270863 29 4.4
02_02_0151 - 7220335-7220819,7220933-7223507 29 5.8
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 7.7
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 28 7.7
03_05_0677 + 26663880-26664581 28 7.7
>08_01_0413 - 3679887-3681254
Length = 455
Score = 31.9 bits (69), Expect = 0.63
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 254 IEPCGHLLCTPCLTAW 301
+ PCGHL C PC+ W
Sbjct: 253 VTPCGHLFCWPCIYQW 268
>06_03_0341 + 19716846-19717349
Length = 167
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 197 NGQHVPALQDMRRKRQGHQIEPCGHLLCTPCLTAWQIDSEG 319
+G+ L ++RR + Q+ C HL C+ W I S+G
Sbjct: 101 DGECAICLGEVRRGQVVKQLPACTHLFHARCIDKWLITSQG 141
>05_05_0173 + 22956927-22958615
Length = 562
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 254 IEPCGHLLCTPCLTAW 301
+ CGHL C PCL W
Sbjct: 250 VTSCGHLFCWPCLYQW 265
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 396 TQHHVRGQEPKANGKSGLFELLWIVRLLRMQWIEFGRCGSGNAANG 533
+Q+ +R +NG +G L + LLRMQ+ +F R + N A+G
Sbjct: 35 SQNVIRTSRKASNGVAGSAILFRVSPLLRMQYPDFRRALTHNIASG 80
>01_06_1224 - 35508842-35510404
Length = 520
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 254 IEPCGHLLCTPCLTAW 301
+ CGHL C PCL W
Sbjct: 206 VTSCGHLFCWPCLYQW 221
>12_02_1243 + 27300978-27301682
Length = 234
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 40 CGHLFCWPCLYKW 52
>01_06_0829 - 32270189-32270863
Length = 224
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 42 CGHLFCWPCLYEW 54
>02_02_0151 - 7220335-7220819,7220933-7223507
Length = 1019
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 226 ILQSW-NVLPISQYNSYCSWVTVM*SSAGDMMAL-LKSGFVSRP 101
I Q W N P+S ++S +W V+ SS G + L L S ++RP
Sbjct: 34 IKQDWDNPAPLSSWSSTGNWTGVISSSTGQVTGLSLPSLHIARP 77
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 373 DAFVPPRPPNTTSEAKNPKPT 435
D PP PP+T+S K+P P+
Sbjct: 16 DPLPPPPPPSTSSSQKSPSPS 36
>06_03_0723 +
23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 48 LVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQEQYEL 188
+V L + + +Y GR ++ D +ISP E H T + Y+L
Sbjct: 14 IVAPALAATKPSYIVYLGGRHSHGD-DGGVISPEEAHRTAAESHYDL 59
>03_05_0677 + 26663880-26664581
Length = 233
Score = 28.3 bits (60), Expect = 7.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PC+ W
Sbjct: 39 CGHLFCWPCIYRW 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,138,119
Number of Sequences: 37544
Number of extensions: 424148
Number of successful extensions: 1591
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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