Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021277
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                     143   2e-34
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   5e-20
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)               29   3.4  
SB_6825| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score =  143 bits (346), Expect = 2e-34
 Identities = 61/84 (72%), Positives = 74/84 (88%)
 Frame = +3

Query: 3   TADGEILQTIPQNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQEQY 182
           T +  ILQTIPQN+SL QAL+DG REG+YLYPDG+D NPDLS  +I+P ++H+ VT+EQY
Sbjct: 113 TPEHTILQTIPQNRSLCQALIDGAREGYYLYPDGQDLNPDLSQHLITPPDEHVKVTEEQY 172

Query: 183 ELYCEMGSTFQLCKICAENDKDIR 254
           ELYCEMGSTFQLCKICAEN+KD+R
Sbjct: 173 ELYCEMGSTFQLCKICAENNKDVR 196



 Score = 35.5 bits (78), Expect = 0.052
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 322 GCPFCRAEIKGTEQVVVDAFVP 387
           GCPFCR+ IK  + VVVD F P
Sbjct: 219 GCPFCRSPIKDIQTVVVDPFQP 240



 Score = 35.1 bits (77), Expect = 0.069
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 251 QIEPCGHLLCTPCLTAWQ 304
           +IEPCGHL+C  CL  WQ
Sbjct: 196 RIEPCGHLMCHLCLEQWQ 213


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 48/84 (57%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   TADGEILQTIPQNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQEQY 182
           T +  ILQTIPQN+SL QAL+DG             + P    A I+P ++H+ VT+EQY
Sbjct: 322 TPEHTILQTIPQNRSLCQALIDG-------------SQPRPEPAPITPPDEHVKVTEEQY 368

Query: 183 ELYCEMGSTFQLCKICAENDKDIR 254
           ELYCEMGSTFQLCKICAEN+KD+R
Sbjct: 369 ELYCEMGSTFQLCKICAENNKDVR 392



 Score = 35.1 bits (77), Expect = 0.069
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 251 QIEPCGHLLCTPCLTAWQ 304
           +IEPCGHL+C  CL  WQ
Sbjct: 392 RIEPCGHLMCHLCLEQWQ 409



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 322 GCPFCRAEIKGTEQVVVDAFVP 387
           GCPFCR+ +K  + VVVD F P
Sbjct: 415 GCPFCRSPMKDIQTVVVDPFQP 436


>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 251 QIEPCGHLLCTPCLT 295
           QI+PCGH +CT C T
Sbjct: 443 QIKPCGHRVCTKCYT 457


>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 254 IEPCGHLLCTPCLTAW 301
           I  CGHL C PCL  W
Sbjct: 75  ISMCGHLFCWPCLHRW 90


>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
          Length = 952

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 114 NPDLSSAIISPAEDHITVT-QEQYELYCEMGSTFQLCKICAENDKDI 251
           NP +  A +SP   HI  T QE  E+ C  GS+     + + +D+D+
Sbjct: 848 NPRVLGAAVSPGAVHIASTMQEHVEMLCFKGSS--ASSVASHSDEDL 892


>SB_6825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = -3

Query: 263 TALSDVLVVFGAYLAKLERAAHFAVQLVLLLGYCDVILG 147
           +AL++V  +  A   +LE+A H+ +Q+++ +G+C V LG
Sbjct: 143 SALANVDKIILAGGQELEQA-HYDIQIIIRVGFCTVSLG 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,000,161
Number of Sequences: 59808
Number of extensions: 477381
Number of successful extensions: 1508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)