Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021277
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.       122   3e-28
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...   122   3e-28
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...   122   3e-28
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...   122   3e-28
Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical pr...    30   1.7  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    29   3.0  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    29   3.0  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    29   3.0  
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.        29   5.3  
U41273-4|AAA82456.1|  257|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/93 (58%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
 Frame = +3

Query: 9   DGEILQTIPQNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQEQYEL 188
           DG+I QTIPQNKSL+QAL +G++EGFY+YP+GRD + +LS  +  P  D + VT EQYEL
Sbjct: 320 DGKIYQTIPQNKSLIQALHEGHKEGFYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYEL 379

Query: 189 YCEMGSTFQLCKICAENDKDIR*SRAG-ISCAR 284
           YCEMG+TF+LCKIC +N+K+I+    G + CA+
Sbjct: 380 YCEMGTTFELCKICDDNEKNIKIEPCGHLLCAK 412



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 251 QIEPCGHLLCTPCLTAWQIDSEG 319
           +IEPCGHLLC  CL  WQ DS+G
Sbjct: 401 KIEPCGHLLCAKCLANWQ-DSDG 422



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 325 CPFCRAEIKGTEQVVVDAFVPPRPPNTTSEAKN 423
           CPFCR EIKGT +V++D F P   P    +AKN
Sbjct: 427 CPFCRYEIKGTNRVIIDRFKP--TPVEIEKAKN 457


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/93 (58%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
 Frame = +3

Query: 9   DGEILQTIPQNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQEQYEL 188
           DG+I QTIPQNKSL+QAL +G++EGFY+YP+GRD + +LS  +  P  D + VT EQYEL
Sbjct: 320 DGKIYQTIPQNKSLIQALHEGHKEGFYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYEL 379

Query: 189 YCEMGSTFQLCKICAENDKDIR*SRAG-ISCAR 284
           YCEMG+TF+LCKIC +N+K+I+    G + CA+
Sbjct: 380 YCEMGTTFELCKICDDNEKNIKIEPCGHLLCAK 412



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 251 QIEPCGHLLCTPCLTAWQIDSEG 319
           +IEPCGHLLC  CL  WQ DS+G
Sbjct: 401 KIEPCGHLLCAKCLANWQ-DSDG 422



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 325 CPFCRAEIKGTEQVVVDAFVPPRPPNTTSEAKN 423
           CPFCR EIKGT +V++D F P   P    +AKN
Sbjct: 427 CPFCRYEIKGTNRVIIDRFKP--TPVEIEKAKN 457


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/93 (58%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
 Frame = +3

Query: 9   DGEILQTIPQNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQEQYEL 188
           DG+I QTIPQNKSL+QAL +G++EGFY+YP+GRD + +LS  +  P  D + VT EQYEL
Sbjct: 303 DGKIYQTIPQNKSLIQALHEGHKEGFYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYEL 362

Query: 189 YCEMGSTFQLCKICAENDKDIR*SRAG-ISCAR 284
           YCEMG+TF+LCKIC +N+K+I+    G + CA+
Sbjct: 363 YCEMGTTFELCKICDDNEKNIKIEPCGHLLCAK 395



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 251 QIEPCGHLLCTPCLTAWQIDSEG 319
           +IEPCGHLLC  CL  WQ DS+G
Sbjct: 384 KIEPCGHLLCAKCLANWQ-DSDG 405



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 325 CPFCRAEIKGTEQVVVDAFVPPRPPNTTSEAKN 423
           CPFCR EIKGT +V++D F P   P    +AKN
Sbjct: 410 CPFCRYEIKGTNRVIIDRFKP--TPVEIEKAKN 440


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/93 (58%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
 Frame = +3

Query: 9   DGEILQTIPQNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQEQYEL 188
           DG+I QTIPQNKSL+QAL +G++EGFY+YP+GRD + +LS  +  P  D + VT EQYEL
Sbjct: 303 DGKIYQTIPQNKSLIQALHEGHKEGFYIYPNGRDQDINLSKLMDVPQADRVQVTSEQYEL 362

Query: 189 YCEMGSTFQLCKICAENDKDIR*SRAG-ISCAR 284
           YCEMG+TF+LCKIC +N+K+I+    G + CA+
Sbjct: 363 YCEMGTTFELCKICDDNEKNIKIEPCGHLLCAK 395



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 251 QIEPCGHLLCTPCLTAWQIDSEG 319
           +IEPCGHLLC  CL  WQ DS+G
Sbjct: 384 KIEPCGHLLCAKCLANWQ-DSDG 405



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 325 CPFCRAEIKGTEQVVVDAFVPPRPPNTTSEAKN 423
           CPFCR EIKGT +V++D F P   P    +AKN
Sbjct: 410 CPFCRYEIKGTNRVIIDRFKP--TPVEIEKAKN 440


>Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical
           protein C16C10.7 protein.
          Length = 235

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 263 CGHLLCTPCLTAW 301
           CGHL C PCL+ W
Sbjct: 41  CGHLFCWPCLSQW 53


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1651

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 331  FCRAEIKGTEQVVVDAFVPPRPPNTTSEAKNPK 429
            FC+ +I+G E      +V P+ P T  E K  K
Sbjct: 1138 FCKTQIRGEELKATIQYVYPQTPRTVEELKEQK 1170


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            a protein.
          Length = 1650

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 331  FCRAEIKGTEQVVVDAFVPPRPPNTTSEAKNPK 429
            FC+ +I+G E      +V P+ P T  E K  K
Sbjct: 1138 FCKTQIRGEELKATIQYVYPQTPRTVEELKEQK 1170


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            c protein.
          Length = 1651

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 331  FCRAEIKGTEQVVVDAFVPPRPPNTTSEAKNPK 429
            FC+ +I+G E      +V P+ P T  E K  K
Sbjct: 1138 FCKTQIRGEELKATIQYVYPQTPRTVEELKEQK 1170


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 276 KRCPHGSI*CPCRFRRISCKAGTC-CPFRST 187
           + CP G++  P +   ++C  GTC CP +ST
Sbjct: 53  EECPEGTLSSPDQTGCLNCNNGTCHCPSQST 83


>U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 667 IVKKKSQHNERTDKRHACG-HFLRCLSPSSMSSA 569
           + K KSQ +   DK +  G HF+RC+ P+S   A
Sbjct: 444 VAKFKSQLSSLLDKLNNTGTHFVRCVKPNSQMKA 477


>U41273-4|AAA82456.1|  257|Caenorhabditis elegans Hypothetical
           protein C26B9.2 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 321 LPSESICHAVRQGVHKRCPHGSI*CPCRFRRISCKAGTCCPFRSTTRIAL 172
           L S+   H  RQ +H + P G++  P  +  I+CK   C P++ T  + +
Sbjct: 166 LLSDPSLHYNRQ-IHPKLPVGAL--PREYEPIACKPPLCNPYQGTLGVGV 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,602
Number of Sequences: 27780
Number of extensions: 343973
Number of successful extensions: 1263
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)