Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021277
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06435.1 68416.m00743 Expressed protein 33 0.17
At1g11145.1 68414.m01276 hypothetical protein 31 0.91
At5g24290.2 68418.m02858 integral membrane family protein contai... 30 1.6
At5g24290.1 68418.m02857 integral membrane family protein contai... 30 1.6
At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putat... 29 2.8
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 29 3.7
At3g52230.1 68416.m05739 expressed protein 29 3.7
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 29 4.9
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 29 4.9
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 29 4.9
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa... 29 4.9
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 28 6.4
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont... 28 6.4
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 28 8.5
>At3g06435.1 68416.m00743 Expressed protein
Length = 200
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -3
Query: 248 VLVVFGAYLA-----KLERAAHFAVQLVLLLGYCDVILGGRYDGATQ 123
+ VVFG ++ +ER F V L+LL G C + G+YD TQ
Sbjct: 122 ISVVFGIFVLVQLVFPVERFYFFYVVLILLFGCCSAVFAGQYDPKTQ 168
>At1g11145.1 68414.m01276 hypothetical protein
Length = 162
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 401 LGGRGGTNASTTTCSVPFISALQ 333
L RGGT+AST TC +P+ +LQ
Sbjct: 42 LSSRGGTDASTNTCMLPWQYSLQ 64
>At5g24290.2 68418.m02858 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 534
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 36 QNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAE-DHITVTQEQYELYCEMGST 209
+ KS ++ LL G +E + L + + N SS + +++ TQE YELYC ST
Sbjct: 145 EEKSNLEKLL-GTQENYELGNEDEEKNERSSSDSEEKSNLENLLATQENYELYCPSCST 202
>At5g24290.1 68418.m02857 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 550
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 36 QNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAIISPAE-DHITVTQEQYELYCEMGST 209
+ KS ++ LL G +E + L + + N SS + +++ TQE YELYC ST
Sbjct: 161 EEKSNLEKLL-GTQENYELGNEDEEKNERSSSDSEEKSNLENLLATQENYELYCPSCST 218
>At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putative
(HMA1) contains InterPro accession IPR001757: ATPase,
E1-E2 type; identical to Potential
cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC
3.6.3.5) (Swiss-Prot:Q9M3H5) [Arabidopsis thaliana];
identical to cDNA putative transcription factor (MYB73)
mRNA, partial cds GI:3941503
Length = 819
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 446 TAFTVGFGFLASDVVLGGRGGTNASTTTCSVP 351
T T G A + + G +GGTN+S TC +P
Sbjct: 457 TLTTGGLTCKAIEPIYGHQGGTNSSVITCCIP 488
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 424 GSWPRTWCWVGXXXXXXXXXXXRFPL-SRLCRTDNPAFGINLPRSETGRAQEMPARLYLM 248
GSW ++W PL SR +T+ P+ G + +G +P L
Sbjct: 13 GSWEKSWRTCVVRAQKSLVATPETPLQSRPGKTETPSAGHTNSKESSGTNPMIPLSSPLW 72
Query: 247 SLSFSAHILQSWNV 206
SLS S LQS +V
Sbjct: 73 SLSTSVDTLQSSSV 86
>At3g52230.1 68416.m05739 expressed protein
Length = 145
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 376 AFVPPRPPNTTSEAKNPKPT 435
AF+ P+PP T +A PKPT
Sbjct: 31 AFLQPKPPPATIDANAPKPT 50
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 43 CGHLFCWPCLYRW 55
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 34 CGHLFCWPCLYKW 46
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 38 CGHLFCWPCLYKW 50
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 154 CGHLYCWPCLYQW 166
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 154 CGHLYCWPCLYQW 166
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PCL W
Sbjct: 154 CGHLYCWPCLYQW 166
>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
family protein very low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 692
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 60 LLDGYREGFYLYPDGRDTNPDLSSAIISPAEDHITVTQ 173
+ +G R+G + D RD NP S ++S D T+ Q
Sbjct: 330 IAEGLRKGVKVMEDRRDKNPVASIILLSDGRDTYTMNQ 367
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PC+ W
Sbjct: 36 CGHLFCWPCIHKW 48
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PC+ W
Sbjct: 59 CGHLFCWPCIYKW 71
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PC+ W
Sbjct: 63 CGHLFCWPCIHKW 75
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 263 CGHLLCTPCLTAW 301
CGHL C PC+ W
Sbjct: 63 CGHLFCWPCIHKW 75
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 239 RQGHQIEPCGHLLCTPCLTAW 301
RQ PCGH+ C C+ W
Sbjct: 334 RQHPTATPCGHVFCWSCIMEW 354
>At1g80080.1 68414.m09374 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 496
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 30 IPQNKSLVQALLDGYREGFYLYPDGRDTNPDLSSAI 137
I + + AL+DG + GF + DG T PD A+
Sbjct: 27 ITSDSTAPSALIDGPQTGFTMTNDGARTEPDEQDAV 62
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 69 GYREGFYLYPDGRDTNPDLSSAIIS 143
GY+ Y YPDG+ NP+ +SA +S
Sbjct: 77 GYQWAIYFYPDGK--NPEDNSAYVS 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,669
Number of Sequences: 28952
Number of extensions: 320990
Number of successful extensions: 1201
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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