Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021276
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 56 3e-08
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 34 0.14
01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638 31 0.75
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 31 0.99
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 29 4.0
12_01_0511 + 4049760-4049967,4050096-4050166,4051306-4051364,405... 28 9.2
09_01_0019 + 403078-404211 28 9.2
01_06_1435 + 37351653-37351990,37352241-37352424 28 9.2
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +2
Query: 500 ASCKSEDLSEVSGIGCLYQSGVDRLGRPVVVFIGKXFPIGDIDXXXXXXXXXXXXDPIVR 679
A S +LSE++ + +Y+ GVD GRPV+V +G F + +D +P+++
Sbjct: 419 AKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVVKEFEPLIQ 478
Query: 680 GDYVIAYFHTLASSANHPPFSWLK 751
Y I YFH+ AS P ++K
Sbjct: 479 KPYSIVYFHSAASLQPQPDLGFMK 502
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 33.9 bits (74), Expect = 0.14
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Frame = +2
Query: 551 YQSGVDRLGRPVVVFIGKXFPIGDID------------XXXXXXXXXXXXDPIVRGDYVI 694
Y+ GVD GRPV+V +G F + +D +P+++ Y I
Sbjct: 277 YRGGVDSEGRPVMVVVGAHFLLRCLDLERFILYVVKLILTGLNLPSLQEFEPLIQKPYSI 336
Query: 695 AYFHTLASSANHPPFSWLK 751
YFH+ AS P ++K
Sbjct: 337 VYFHSAASLQVRPDLGFMK 355
>01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638
Length = 272
Score = 31.5 bits (68), Expect = 0.75
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +2
Query: 497 AASCKSEDLSEVSGIGCLYQSGVDRLGRPVVVFIGKXF--PIGDIDXXXXXXXXXXXXDP 670
+A ED S++ + + G DR GR +V +G+ F P + P
Sbjct: 44 SAPADGEDFSDLEELQVVRVQGTDRAGRRIVRVVGRFFPGPYSFLIVNTNITSAFRIPAP 103
Query: 671 IVRGDYVIAY-FHTLASSANHPPFSWL 748
++ GD + Y H L + PF L
Sbjct: 104 VIGGDRLKKYVLHKLRTELPEGPFCLL 130
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 31.1 bits (67), Expect = 0.99
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +1
Query: 568 STGSARGRLHREXVPHRGHRLGKGTPVPDQTPGSDRARRLRDRVLSHAGLVGEPSALLV 744
++GS R R+ R R TP P+ T S+RARR R R S + P AL+V
Sbjct: 296 ASGSPRARVLTPEPATRSPRARVQTPEPEPTASSERARRPRKR--SSLRFLVAPLALVV 352
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 506 CKSEDLSEVSGIGCLYQSGVDRLGRPVVVFIG 601
C SE+LS ++G+ + GVD G V ++G
Sbjct: 92 CNSEELSRLAGVDLFAEMGVDVTGDDFVPYMG 123
>12_01_0511 +
4049760-4049967,4050096-4050166,4051306-4051364,
4052424-4052549,4052943-4053037,4053263-4053312
Length = 202
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 547 SVSERRGSTGSARGRLHREXVPHRGHRLGKGTPV 648
S S RR GSARGR E G R + PV
Sbjct: 6 SSSRRRRWVGSARGRCAEESASAAGRRRSRSRPV 39
>09_01_0019 + 403078-404211
Length = 377
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +1
Query: 514 RRPERGIWDRMSVSERRGSTGSARGRLHREXVPHRGHRLGKGTPVPDQTPGSDRARRLRD 693
+R ER D S S+++ S + R R R HR T D++ G DR RR R
Sbjct: 258 KRHERSDEDSESDSDKKRHRKSRKDRKRR-----RSHRRSDDTSDEDESGGEDRRRR-RH 311
Query: 694 RVLSH 708
R H
Sbjct: 312 RKRQH 316
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 529 GIWDRMSVSERRGSTGSARGRLHREXVP 612
G WD ++RRG G RG R VP
Sbjct: 79 GSWDDNDGNDRRGGGGKPRGEERRRGVP 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,302,109
Number of Sequences: 37544
Number of extensions: 285280
Number of successful extensions: 733
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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