Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021276
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)                 42   7e-04
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   7e-04
SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)      29   4.1  

>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
          Length = 429

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 665 DPIVRGDYVIAYFHTLASSANHPPFSWLKE 754
           D IV  DYV+ YFHT ++  N PP S+LKE
Sbjct: 300 DRIVNRDYVVVYFHTHSTEENQPPMSFLKE 329


>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 665 DPIVRGDYVIAYFHTLASSANHPPFSWLKE 754
           D IV  DYV+ YFHT ++  N PP S+LKE
Sbjct: 10  DRIVNRDYVVVYFHTHSTEENQPPMSFLKE 39


>SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 665 DPIVRGDYVIAYFHTLASSANHPPFSWLKE 754
           D  V  DY I YFH   +S N P FSWL +
Sbjct: 187 DQYVESDYTIVYFHYGLTSKNKPNFSWLHQ 216


>SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)
          Length = 316

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 651 RYRSAFSKSMSPMGNXFPMKTTTGRPSRSTPL*YRHPIPDTSLRSSDLHDA 499
           RYRS   K  S +   F +  T G P ++  +   H IPD    ++ ++D+
Sbjct: 50  RYRSCLLKGFSCLIYVFLLVYTEGCPGQAVGISDSHVIPDNRFSATTIYDS 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,036,923
Number of Sequences: 59808
Number of extensions: 326983
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)