Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021276
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical p...    46   4e-05
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z78199-2|CAB54275.1|  582|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF108229-2|AAF17301.1|  582|Caenorhabditis elegans VAB-8S protein.     28   8.2  
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     28   8.2  

>Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical
           protein W02B12.8a protein.
          Length = 444

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 566 DRLGRPVVVFIGKXFPIG-DIDXXXXXXXXXXXXDPIVRGDYVIAYFHTLASSANHPPFS 742
           DR+GRP+VV      P   +ID            D IV  DY I YFH    S N PP  
Sbjct: 89  DRVGRPIVVVYAYRLPSSKEIDHARLLQYLVQIIDKIVDQDYTIVYFHYGLRSHNKPPVR 148

Query: 743 WL 748
           WL
Sbjct: 149 WL 150


>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical protein
            K12F2.2a protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = -1

Query: 669  GSRSLIRYRSAFSKSMSPMGNXFPMKTTTGRPSRSTPL*YRHPIPDTSLRSSD 511
            GS+  +++RS +++  SP     P  +++GR S +    +  P+  T+ +S++
Sbjct: 888  GSKEELQWRSPYAQMTSPKSYGGPGTSSSGRGSSAPGSDFETPVVSTTEKSAN 940


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical protein
            K12F2.2a protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = -1

Query: 669  GSRSLIRYRSAFSKSMSPMGNXFPMKTTTGRPSRSTPL*YRHPIPDTSLRSSD 511
            GS+  +++RS +++  SP     P  +++GR S +    +  P+  T+ +S++
Sbjct: 888  GSKEELQWRSPYAQMTSPKSYGGPGTSSSGRGSSAPGSDFETPVVSTTEKSAN 940


>Z78199-2|CAB54275.1|  582|Caenorhabditis elegans Hypothetical
           protein K12F2.2b protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = -1

Query: 669 GSRSLIRYRSAFSKSMSPMGNXFPMKTTTGRPSRSTPL*YRHPIPDTSLRSSD 511
           GS+  +++RS +++  SP     P  +++GR S +    +  P+  T+ +S++
Sbjct: 404 GSKEELQWRSPYAQMTSPKSYGGPGTSSSGRGSSAPGSDFETPVVSTTEKSAN 456


>AF108229-2|AAF17301.1|  582|Caenorhabditis elegans VAB-8S protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = -1

Query: 669 GSRSLIRYRSAFSKSMSPMGNXFPMKTTTGRPSRSTPL*YRHPIPDTSLRSSD 511
           GS+  +++RS +++  SP     P  +++GR S +    +  P+  T+ +S++
Sbjct: 404 GSKEELQWRSPYAQMTSPKSYGGPGTSSSGRGSSAPGSDFETPVVSTTEKSAN 456


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = -1

Query: 669  GSRSLIRYRSAFSKSMSPMGNXFPMKTTTGRPSRSTPL*YRHPIPDTSLRSSD 511
            GS+  +++RS +++  SP     P  +++GR S +    +  P+  T+ +S++
Sbjct: 888  GSKEELQWRSPYAQMTSPKSYGGPGTSSSGRGSSAPGSDFETPVVSTTEKSAN 940


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,613
Number of Sequences: 27780
Number of extensions: 247332
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)