Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021276
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    58   8e-09
At1g23560.1 68414.m02964 expressed protein contains Pfam profile...    29   2.5  
At4g10970.3 68417.m01785 expressed protein                             28   7.7  
At4g10970.2 68417.m01784 expressed protein                             28   7.7  
At4g10970.1 68417.m01783 expressed protein                             28   7.7  

>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 27/84 (32%), Positives = 43/84 (51%)
 Frame = +2

Query: 500 ASCKSEDLSEVSGIGCLYQSGVDRLGRPVVVFIGKXFPIGDIDXXXXXXXXXXXXDPIVR 679
           A   S +LSE++ +  +Y+ GVD  G PV+V +G  F +  +D            +P+++
Sbjct: 384 AKANSINLSEIAEMKIVYRGGVDTEGHPVMVVVGAHFLLRCLDLERFVLYVIKEFEPVIQ 443

Query: 680 GDYVIAYFHTLASSANHPPFSWLK 751
             Y I YFH+ AS    P   W+K
Sbjct: 444 KPYSIVYFHSAASLQVQPDLGWMK 467


>At1g23560.1 68414.m02964 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 332

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 325 KSEIILKV*ITNGP*SSYKTKQKTKWRWTLWQWNCQI 435
           K  I  KV I  GP  + + KQ   W++  W   C I
Sbjct: 138 KENISRKVLIDEGPKQTVEVKQAAAWKFLWWDGTCPI 174


>At4g10970.3 68417.m01785 expressed protein
          Length = 217

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 678 RTIGSRSLIRYRSAFSKSMSPM-GNXFPMKTTTGRPSRS-TP 559
           R + SRS +R + AF+K  S   GN FP+ TT  R + S TP
Sbjct: 64  RYMDSRSDVR-QGAFAKKRSNFQGNQFPVTTTVARKAASATP 104


>At4g10970.2 68417.m01784 expressed protein
          Length = 217

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 678 RTIGSRSLIRYRSAFSKSMSPM-GNXFPMKTTTGRPSRS-TP 559
           R + SRS +R + AF+K  S   GN FP+ TT  R + S TP
Sbjct: 64  RYMDSRSDVR-QGAFAKKRSNFQGNQFPVTTTVARKAASATP 104


>At4g10970.1 68417.m01783 expressed protein
          Length = 217

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 678 RTIGSRSLIRYRSAFSKSMSPM-GNXFPMKTTTGRPSRS-TP 559
           R + SRS +R + AF+K  S   GN FP+ TT  R + S TP
Sbjct: 64  RYMDSRSDVR-QGAFAKKRSNFQGNQFPVTTTVARKAASATP 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,126,713
Number of Sequences: 28952
Number of extensions: 223451
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)