Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021275
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    54   2e-08
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    39   5e-04
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   8.1  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +2

Query: 38  ENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV 151
           ENT+ S  KAA  GA  +E DVQ++KDM+PV+YHDF V
Sbjct: 769 ENTLQSFIKAADLGASYVELDVQMTKDMVPVVYHDFIV 806


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +2

Query: 38  ENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHD 142
           ENTI + ++A  +GAD +E DV+L+KD +  I HD
Sbjct: 54  ENTILAFQQAVKAGADCVETDVRLTKDEVVCILHD 88


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 539 WFVNFESLLKNNNKKGEPSTYIFNYRVASF 450
           W ++F + L+N+NK  +    +++  +A F
Sbjct: 405 WIIDFANYLENSNKISDTPNMLYSSALAMF 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,978
Number of Sequences: 5004
Number of extensions: 42028
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)