Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021275
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)                  50   2e-06
SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.074
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   31   0.91 
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)               28   6.4  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
          Length = 534

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 38/59 (64%)
 Frame = +2

Query: 71  ASGADLLEFDVQLSKDMIPVIYHDFYVCISMKRKKEIEFTEMLELPVKDLTLEHLQKLK 247
           + G   +EFDV ++KD +PV++HD  V +S++   + +F    E+PVKDLT +  + +K
Sbjct: 258 SQGVHFVEFDVHVTKDHVPVVFHDDTVKLSVETSNQ-KFAIDFEIPVKDLTFQQTRHVK 315


>SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 8   IILFRGNAIR--ENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHD 142
           +I  RGN +R  ENT+        + AD  E D+ L+KD   V +HD
Sbjct: 48  VIGHRGNPVRYQENTLEGFTSLLGTNADGFELDIYLTKDEELVCFHD 94


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 185  FTEMLELPVKDLTLEHLQKLKVHYEA*LFTVH-HSEDLTRN*FTLHISSNVCYNWSHKFK 361
            F E+L + ++  T E  + ++  +E  L T+H H  D+  +   +HI +   + W  + +
Sbjct: 1862 FQELLNVLIEQTTKELTRVVRTKFET-LITIHVHQRDIFDDLCRMHIRTPSDFEWLKQIR 1920

Query: 362  IYYIKKRKTVFL 397
             Y+       FL
Sbjct: 1921 FYFNDDTDNEFL 1932


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 281  HSEDLTRN*FTLHISSNVCYNWSHKFKIYYIKKRKTVF--LSIY 406
            H  D+TR+     ++ N  + W  + + Y+  K+K V   LSI+
Sbjct: 1766 HQRDVTRSLLNCGVTGNKAFEWLSQMRFYFDPKQKEVLQQLSIH 1809


>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
          Length = 360

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 122 IPVIYHDFYVC--ISMKRKKEIEFTEMLELPVKD 217
           +PVI+HD Y C      R K  +FT+++E  +KD
Sbjct: 58  LPVIHHDQYSCPFPPQHRFKMAKFTKLMEWLLKD 91


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 215  DLTLEHLQKL-KVHYEA*LFTVH-HSEDLTRN*FTLHISSNVCYNWSHKFKIYY 370
            D+T + L K+ +  +E  L T+H H  D+  +   +HI S   + W  + + Y+
Sbjct: 1851 DVTTQELTKMERTKFET-LVTIHVHQRDIFDDLVKMHIRSVTDFEWLKQSRFYF 1903


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,717,611
Number of Sequences: 59808
Number of extensions: 273261
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)