Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021275
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 311 TLHISSNVCYNWSHKFKIYYIKKRKTVFLSIY 406
           T+H ++N  YN+++K+        K ++   Y
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNY 120


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 366 ITLKSVKLCF*AFIE 410
           I L +V+LCF  F+E
Sbjct: 181 IDLNAVRLCFQVFLE 195


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 366 ITLKSVKLCF*AFIE 410
           I L +V+LCF  F+E
Sbjct: 181 IDLNAVRLCFQVFLE 195


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 326 SNVCYNWSHK 355
           SN  YNW HK
Sbjct: 184 SNENYNWEHK 193


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 ITSEGLDFGTPTKTEGTL*GLAVYSS 279
           I+S+GL F    KT   +  +A+Y S
Sbjct: 772 ISSDGLKFAFDVKTTLNISDIALYPS 797


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,792
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)