Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021275
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41080.2 68418.m04994 glycerophosphoryl diester phosphodieste...    48   5e-06
At5g41080.1 68418.m04993 glycerophosphoryl diester phosphodieste...    48   5e-06
At3g02040.1 68416.m00167 glycerophosphoryl diester phosphodieste...    45   3e-05
At5g43300.1 68418.m05292 glycerophosphoryl diester phosphodieste...    44   6e-05
At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste...    34   0.079
At1g74210.1 68414.m08595 glycerophosphoryl diester phosphodieste...    33   0.11 
At5g08030.1 68418.m00934 glycerophosphoryl diester phosphodieste...    31   0.56 
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste...    27   6.9  

>At5g41080.2 68418.m04994 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 358

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +2

Query: 20  RGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV 151
           R   ++EN+I S   AA    D +EFDVQ++KD  PVI+HD ++
Sbjct: 41  RARGVKENSILSFNSAAKYPIDFIEFDVQVTKDDCPVIFHDDFI 84


>At5g41080.1 68418.m04993 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 374

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +2

Query: 20  RGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV 151
           R   ++EN+I S   AA    D +EFDVQ++KD  PVI+HD ++
Sbjct: 57  RARGVKENSILSFNSAAKYPIDFIEFDVQVTKDDCPVIFHDDFI 100


>At3g02040.1 68416.m00167 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 361

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 18/44 (40%), Positives = 31/44 (70%)
 Frame = +2

Query: 20  RGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV 151
           R +A++EN+I S   A+    D +EFDVQ+++D  P+I+HD ++
Sbjct: 53  RFSALKENSILSFNAASKFPLDFIEFDVQVTRDGCPIIFHDDFI 96


>At5g43300.1 68418.m05292 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 333

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
 Frame = +2

Query: 32  IRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV------CISMKRKKEIEFTE 193
           I+EN++ S   AA    D +EFDVQ+++D  PVI+HD ++       I  KR  E++  E
Sbjct: 21  IKENSLLSFNVAADFPIDFIEFDVQVTRDGCPVIFHDIFMFTQEQGVIIEKRVTEMDLHE 80

Query: 194 MLEL-PVKDLT 223
            L   P +D T
Sbjct: 81  FLSYGPQRDGT 91


>At3g20520.1 68416.m02598 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to glycerophosphodiester phosphodiesterase
           (GI:1399038) [Borrelia hermsii]
          Length = 729

 Score = 33.9 bits (74), Expect = 0.079
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 44  TIASLKKAAASGADLLEFDVQLSKDMIPVIYHDF 145
           T  + ++AA+ GAD+L+ +VQ+SKD IP     F
Sbjct: 353 TDLAYQRAASDGADILDCNVQMSKDKIPFCMSSF 386


>At1g74210.1 68414.m08595 glycerophosphoryl diester
           phosphodiesterase family protein low similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 392

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 32  IRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHD 142
           I E T A+  KA   G D +E D+  SKD + + +HD
Sbjct: 56  IPEETTAAYLKAIEEGTDFIETDILSSKDGVLICFHD 92


>At5g08030.1 68418.m00934 glycerophosphoryl diester
           phosphodiesterase family protein similar to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 38  ENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHD 142
           E T  +  +A   GAD +E D+  SKD + + +HD
Sbjct: 58  EETAPAYMRAIEEGADFIETDILSSKDGVLICHHD 92


>At4g26690.1 68417.m03846 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 759

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 44  TIASLKKAAASGADLLEFDVQLSKDMIP 127
           T  + KKA   GAD+++  VQLS D  P
Sbjct: 376 TDLAYKKAIKDGADVIDCSVQLSSDGTP 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,459,712
Number of Sequences: 28952
Number of extensions: 196248
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)