Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021273
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    26   4.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   4.9  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +2

Query: 500 SVIKYKFIDIVYIKTVINSSNKIFTHL*YK*EKNIYIP 613
           S IK    DI  I TVIN SN++     YK +K  YIP
Sbjct: 44  SKIKTTRKDIARILTVINESNRLAAREAYKNKK--YIP 79


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 565 NIYSPVI*IRKEHLYTLISVFKLKFQTIL 651
           N+ S  I   K H Y L++VFKL F+  L
Sbjct: 313 NLVSSWILNTKTHSYALVTVFKLYFELTL 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,043
Number of Sequences: 5004
Number of extensions: 48842
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)