Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021273
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     31   0.96 
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    31   1.3  
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     29   2.9  
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    29   3.9  
10_08_0330 - 16816497-16819952                                         28   6.8  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   9.0  
02_01_0422 - 3084940-3087072                                           28   9.0  
01_01_0490 + 3620523-3623403,3623524-3623996                           28   9.0  
01_01_0205 + 1764034-1767601,1767934-1767944                           28   9.0  

>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 156 LKKTSILHSSIFSTSGPLPAPLGSLTKISTI 64
           L + +ILH S    +GP P  LG+LTK+S +
Sbjct: 365 LIQLNILHLSANQLTGPFPTSLGNLTKLSLL 395


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 156 LKKTSILHSSIFSTSGPLPAPLGSLTKIS 70
           + + +ILH S    +GP P  LG+LTK+S
Sbjct: 374 MTQLNILHLSFNRLTGPFPTSLGNLTKLS 402


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 138 LHSSIFSTSGPLPAPLGSLTKISTI 64
           L+ SI + SGP+PA LG LTK+  +
Sbjct: 242 LNLSINAFSGPIPASLGKLTKLQDL 266


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 156 LKKTSILHSSIFSTSGPLPAPLGSLTKISTI 64
           LKK  ++  S  + SG LP+ LG+ T+++TI
Sbjct: 251 LKKLEVIRLSNNNMSGNLPSSLGNCTRLTTI 281


>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 159 ILKKTSILHSSIFSTSGPLPAPLGSLTKISTI 64
           +L     L+ S  + SGP+PA LG LTK+  +
Sbjct: 230 MLPNLRFLNLSFNAFSGPIPASLGRLTKLQDL 261


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 156 LKKTSILHSSIFSTSGPLPAPLGSLTKIS 70
           L + S LH S+   +GP+PA +G+L+ +S
Sbjct: 368 LGQLSELHLSMNQLTGPIPASIGNLSALS 396


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 156 LKKTSILHSSIFSTSGPLPAPLGSLTKISTI 64
           LK+   LH    + SG LP+ LG  TK+ TI
Sbjct: 288 LKRLKELHICSNNLSGELPSSLGDCTKLVTI 318


>01_01_0490 + 3620523-3623403,3623524-3623996
          Length = 1117

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 150 KTSILHSSIFSTSGPLPAPLGSLTKISTI 64
           K ++L  +  S SGPLPA LG L  ++T+
Sbjct: 227 KLTMLGLAETSISGPLPATLGQLKNLNTL 255


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -3

Query: 138 LHSSIFST---SGPLPAPLGSLTKISTI 64
           L S +FS    +GP+P+ +G+LTK+ T+
Sbjct: 504 LKSMVFSNCEFTGPMPSTIGNLTKLQTL 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,140,392
Number of Sequences: 37544
Number of extensions: 233469
Number of successful extensions: 473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)