Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021273
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 126 IFSTSGPLPAPLGSLTKISTIFDVVLFF 43
           IFSTS  L  P         IFD+++ F
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAF 108


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 126 IFSTSGPLPAPLGSLTKISTIFDVVLFF 43
           IFSTS  L  P         IFD+++ F
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAF 108


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 508 KIQIY*HCLY*NCNKFI*QNIYSP 579
           K+Q+Y  C+  N N     N++ P
Sbjct: 58  KVQLYCECILKNFNILDKNNVFKP 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,615
Number of Sequences: 438
Number of extensions: 3934
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)