Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021273
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41180.1 68418.m05005 leucine-rich repeat protein kinase, put...    30   1.9  
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote...    27   9.9  
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote...    27   9.9  

>At5g41180.1 68418.m05005 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 664

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 156 LKKTSILHSSIFSTSGPLPAPLGSLTKISTI 64
           LKK  IL       +GP+PA +G L++I TI
Sbjct: 121 LKKLKILDLGNNHLTGPIPAEIGKLSRIKTI 151


>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 625

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 114 SGPLPAPLGSLTKISTI 64
           SGPLP  +G+LTK+ T+
Sbjct: 76  SGPLPIAIGNLTKLETL 92


>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 882

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 156 LKKTSILHSSIFSTSGPLPAPLGSLTKISTIFDV 55
           L K   L  S  S SGP+P+ LGSL  + T F+V
Sbjct: 427 LSKVQFLDLSQNSLSGPIPSSLGSLNTL-THFNV 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,917
Number of Sequences: 28952
Number of extensions: 214664
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)