Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021272
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    28   1.4  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    26   4.4  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   7.7  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    25   7.7  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 247 PVFSSKSWCPDTNSTSGS 300
           P +S KSW PD NST+ S
Sbjct: 162 PKWSRKSWNPDVNSTTSS 179


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 663 FAVNTHQCLSDSRAVFFWRNIDVILIQAPFGSCFNSKI 550
           F   + + + DS   F W  +DV++     G C   KI
Sbjct: 56  FLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKI 93


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 514 GTSGTPLDLLANYFTVETTPKWGLYQYHV 600
           G  G  + L AN+F + + P   + QYHV
Sbjct: 16  GGLGKQITLKANFFQIISLPNETINQYHV 44


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -3

Query: 683 KRYPPSVLL*TRISAFRTPELSSSGEIST*Y*YRPHLGVVSTVK*LASRSRGVPE 519
           K YPP + L +   +       S+ ++ T + Y   +G+ S  K      +GVP+
Sbjct: 229 KHYPPKICLHSYSGSIEQISQFSAHKVPTEFYYSFSIGINSRYKNFIQTLKGVPD 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,949
Number of Sequences: 5004
Number of extensions: 48885
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)