Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021272
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 38 0.010
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 37 0.013
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 36 0.030
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 31 1.1
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 30 1.5
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 4.5
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 4.5
06_01_0036 + 364316-365758 29 4.5
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 7.9
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 28 7.9
03_01_0351 - 2758646-2759518 28 7.9
02_05_0571 - 30072521-30072595,30072681-30072749,30072826-300729... 28 7.9
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 7.9
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +1
Query: 511 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSSGVRKALM 648
KGT G + AN+F E K L+QY V I+PE S GV +A+M
Sbjct: 314 KGTYGDRCIVKANHFFAELPDK-DLHQYDVSITPEVTSRGVNRAVM 358
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 514 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISP---EEDSSGVRKALMRVHSKTLGG 675
G G + L AN+F V+ P ++ Y+VDISP +E + ++K L+ + L G
Sbjct: 208 GVEGAEIPLSANHFLVQFDPGQKIFHYNVDISPRPSKETARMIKKKLVEENPSVLSG 264
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 511 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSSGVRKALM 648
KGT G + AN+F E K L+QY V I+PE S GV +A++
Sbjct: 197 KGTFGDRCIVKANHFFAELPDK-DLHQYDVSITPEVPSRGVNRAVI 241
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 514 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSSGVRKALM----RVHSKT-LGGY 678
GT G + + AN+F V + +Y Y V +SP + + + +M R+H ++ LGG
Sbjct: 199 GTVGERIVVRANHFLVRVSDNDMIYLYDVSLSPPPKTRRINRVVMSELARLHRESHLGGI 258
Query: 679 LF 684
F
Sbjct: 259 SF 260
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 514 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEED----SSGVRKALMRVHSKT-LGGY 678
G+ GT + AN+F + K L+QY V I+PE S V + L+R+H + LGG
Sbjct: 178 GSIGTRCLVKANHFFAQLPDK-DLHQYDVSITPELTSRIRSRAVMEELVRLHKMSYLGGR 236
Query: 679 L 681
L
Sbjct: 237 L 237
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 355 ATTHEKIRTGTPFIWRW*CIIRSWPWLSTRGWK 453
+++H ++ T + WRW I R + W RG++
Sbjct: 55 SSSHSRVSDETLWQWRWRQITRPYSWRCRRGFR 87
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 568 TPKWGLYQYHVDISPEEDSSGVRKALMRVHSKTL 669
T +WG YHV +S DS G++K L ++ ++
Sbjct: 659 TDEWGRSFYHVRMSDRVDSCGLKKILEYTYTNSV 692
>06_01_0036 + 364316-365758
Length = 480
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 387 PIHLEVVMH-HP*LAVALDEGVEESFLKLFPSCA 485
P HL VV P + V +D G E L L SCA
Sbjct: 344 PAHLRVVKELRPAVVVCVDHGCERGALNLLQSCA 377
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 239 TTIQCSPVRAGVPTPTAQAGRASHRVTPT-THEHP 340
TT +PV A P PTA + ++ TPT TH P
Sbjct: 111 TTPPTAPVPAAAPPPTAPSPYSAPSPTPTPTHTQP 145
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 194 IYATWS*TSTSIWLGTTIQCSPVRAGVPTPTAQAGRASHRVTPTTHEHPGDIDVQQRMKK 373
+ A W +ST + T SP R T T A R +R+ P T E D +++
Sbjct: 35 LVAVWMASSTLV---TPADFSPFRPTTTTTTTTA-RPRNRMDPVTVEEDADDPPPLTLRQ 90
Query: 374 LELGP 388
E GP
Sbjct: 91 TETGP 95
>03_01_0351 - 2758646-2759518
Length = 290
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 426 AVALDEGVEESFLKLFPSCAH 488
AV L E V + LKL PSC+H
Sbjct: 113 AVCLSEFVRDERLKLLPSCSH 133
>02_05_0571 -
30072521-30072595,30072681-30072749,30072826-30072900,
30072981-30073050,30073168-30073279,30073576-30073674,
30073847-30073939,30074994-30075062,30076845-30076911
Length = 242
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 595 HVDISPEEDSSGVRKALMRVHSKTLG 672
HV+I + DS G + L RV+SKT G
Sbjct: 35 HVNIDSDSDSEGFVEELPRVNSKTNG 60
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +3
Query: 636 KGTDACSQQNTRRISL 683
KG++ACS +NTRR+S+
Sbjct: 1044 KGSEACSIENTRRLSI 1059
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,903
Number of Sequences: 37544
Number of extensions: 341531
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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