Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021272
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         49   4e-06
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              28   8.1  
SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = +1

Query: 511 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSSGVRKALMRVHSKTLG 672
           +G+ GT + +++NYF +ET P+  +YQY+V  SPE D    R AL+    + LG
Sbjct: 36  EGSVGTKVGIVSNYFRLETRPQAAIYQYNVSFSPEVDFKKARFALIGEQRELLG 89


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 241 HNPVFSSKSWCPDTNSTSGSRLTPCYSHYT*TSRRY 348
           + P +   + C +  + S  R TPCY  YT  ++RY
Sbjct: 828 YTPCYERYTPCIERYTPSTKRYTPCYERYTPCTKRY 863



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 271 CPDTNSTSGSRLTPCYSHYT*TSRRYRCAT 360
           C +  + S  R TPCY  YT    RY  +T
Sbjct: 817 CTERYTPSTKRYTPCYERYTPCIERYTPST 846


>SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 514 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEE 618
           G  G  + L AN+F V       LY Y ++ISPE+
Sbjct: 10  GREGRKIKLRANFFQVTLPNVDFLYHYDLEISPEK 44


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 515 VLRVLPWICLPTILLLKQLPNGACINITSIFLQKKTA 625
           + RV  W+ LP ++ L Q  + AC++I++  ++ + A
Sbjct: 125 IRRVAIWLILPVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 357 CTSISPGCSCVVGVTRCEARPA---CAVGVGTPALTGEH 250
           C S S G +   G T C A PA   C+VG  +    G++
Sbjct: 253 CVSCSAGYNATEGSTACSACPAGYECSVGTASLCTAGQY 291


>SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 502 YSFWTCAQDGNSFRKDSSTPSSRAT 428
           +S W C Q G SFR D     S+ T
Sbjct: 407 HSCWKCLQPGRSFRTDKELDMSKET 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,255,747
Number of Sequences: 59808
Number of extensions: 384880
Number of successful extensions: 1111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)