Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021272
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    42   3e-04
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    31   0.58 
Z75550-13|CAA99922.2|  111|Caenorhabditis elegans Hypothetical p...    29   2.3  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    28   5.4  

>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 514 GTSGTPLDLLANYFTVETTPK-WGLYQYHVDISPEEDSSGVRKALMRVHSKT 666
           G+SG P    AN+  +E T   + +YQYHV+  P  DS   R+ ++R ++ T
Sbjct: 44  GSSGQPQKCFANFIPIEMTQSDYSIYQYHVEFEPTVDSKANREKMLRDNNVT 95


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 577 WGLYQYHVDISPEEDSSGVRKALMRVHSKTL 669
           + +YQYHV+  P  DS   R+ ++R  S T+
Sbjct: 6   YSIYQYHVEFEPTVDSKATRENMLRQPSVTV 36


>Z75550-13|CAA99922.2|  111|Caenorhabditis elegans Hypothetical
           protein T22C1.4 protein.
          Length = 111

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 556 TVETTPKWGLYQYHVDISPEEDSSGVRKAL 645
           T+E TP+W   + H  ISP++D S   K L
Sbjct: 8   TLEGTPEWMAIELHGAISPQDDGSFDSKTL 37


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 182 PITTIYATWS*TSTSIWLGTTIQCSPVRAGVPTPTAQAGRASHRVTPT 325
           P+TT+  T     TSI   T+ Q      G PT TAQ   +S  +T T
Sbjct: 364 PVTTVQTT----VTSIGTSTSPQAVVTTTGNPTTTAQLSSSSKTLTST 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,102,824
Number of Sequences: 27780
Number of extensions: 287340
Number of successful extensions: 934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)