Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021272
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 230 WLGTTIQCSPVRAGVPTPTAQAGRASHRVTP 322
           W  + + CSP     P    ++GR   R TP
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGRRRRRRTP 415


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 511 SRCYSFWTCA--QDGNSFRKDSSTPSSR 434
           S C+S +  +  +DGNS+R D     SR
Sbjct: 228 SSCHSRYEDSRHEDGNSYRNDGERSCSR 255


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 440 VESHGQLRMMHHHLQMNGV 384
           ++ H  L+  HHHLQ   V
Sbjct: 138 LQRHHHLQNHHHHLQSTAV 156



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 408 SPPPDEWGP 382
           SPPP++W P
Sbjct: 415 SPPPEDWKP 423



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 479 RWK*FQEGLFHPLVESHGQLRMMHHHL 399
           RWK +Q+ L+     S       HH L
Sbjct: 45  RWKQYQDTLYSGTRSSESLTAQAHHRL 71


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
 Frame = -2

Query: 360 CCTSISPGCSCVVGVTR-----CEARPACAVG 280
           C    +PGC C +G  R     C  R  C  G
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKCLPG 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,744
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)