Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021272
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32940.1 68415.m04038 PAZ domain-containing protein / piwi do...    35   0.044
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    33   0.18 
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    33   0.23 
At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutas...    29   2.2  
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas...    29   2.9  
At5g19110.1 68418.m02273 extracellular dermal glycoprotein-relat...    28   5.0  
At2g18690.1 68415.m02177 expressed protein                             27   8.8  

>At2g32940.1 68415.m04038 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 878

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +1

Query: 514 GTSGTPLDLLANYFTVET-TPKWGLYQYHVDISPEE----DSSGVRKALMRVHSKT 666
           GT+G P++L  N+F V    P    YQY V I+ E     D +G+ + LM    KT
Sbjct: 33  GTTGNPIELCTNHFNVSVRQPDVVFYQYTVSITTENGDAVDGTGISRKLMDQLFKT 88


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
           putative similar to SP|O04379 Argonaute protein (AGO1)
           {Arabidopsis thaliana}; contains Pfam profiles PF02170:
           PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 511 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSSGVRKALMRV 654
           +GT G  + + AN+F V+   +  LY Y V I+PE  S  V + +M++
Sbjct: 153 RGTLGKKVMVRANHFLVQVADR-DLYHYDVSINPEVISKTVNRNVMKL 199


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 514 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPE 615
           G  G+ + LLAN+F V+      +Y Y+V+ISP+
Sbjct: 158 GQDGSVIYLLANHFLVKFDSSQRIYHYNVEISPQ 191


>At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutase 1
           (GSA 1) / glutamate-1-semialdehyde aminotransferase 1
           (GSA-AT 1) identical to GSA 1 [SP|P42799]
          Length = 474

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 520 SGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSSGVRKALMRVHSKTLGGYL 681
           SG PL + A   T++   + G Y+Y +D   +E ++G+ +A  +      GGY+
Sbjct: 348 SGNPLAMTAGIHTLKRLKQAGTYEY-LDKITKELTNGILEAGKKTGHPMCGGYI 400


>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
           (GSA 2) / glutamate-1-semialdehyde aminotransferase 2
           (GSA-AT 2) identical to GSA2 [SP|Q42522]
          Length = 472

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 520 SGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSSGVRKALMRVHSKTLGGYL 681
           SG PL + A   T++   + G Y+Y +D   +E ++G+ +A  +      GGY+
Sbjct: 346 SGNPLAMTAGIHTLKRLSQPGTYEY-LDKITKELTNGILEAGKKTGHAMCGGYI 398


>At5g19110.1 68418.m02273 extracellular dermal glycoprotein-related
           / EDGP-related similar to extracellular dermal
           glycoprotein EDGP precursor [Daucus carota] GI:285741
          Length = 405

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 582 APFGSCFNSKIVGKQIQGSTRSTFLDVTASGRVRKME 472
           APF  CF+S+  GK +        +++   GR+ +++
Sbjct: 296 APFKHCFDSRTAGKNLTAGPNVPVIEIGLPGRIGEVK 332


>At2g18690.1 68415.m02177 expressed protein
          Length = 322

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 415 IRSWPWLSTRGWKSPS*NYFHLA 483
           I+ +P LS + WK P   YF++A
Sbjct: 128 IKDFPVLSLKSWKGPLVTYFYIA 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,266,511
Number of Sequences: 28952
Number of extensions: 261369
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)