Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021271
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    30   0.36 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    27   3.4  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   4.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   4.5  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    26   5.9  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   5.9  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 233  VVNASIIKASSLPYDIHWLGGPTTIEREIPSSKKAIDIYCYTGTTKSLFALWQTVKFQIR 412
            V+N   +KA   PY I W  G   +  E  +S+ +   Y Y      L   W      ++
Sbjct: 1099 VLNQPKLKADLEPYRIDWANGGDLVNSEKDASELSRWDYLYVRLIVDLGGYWNQRMNALK 1158

Query: 413  IKN 421
            +KN
Sbjct: 1159 VKN 1161


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +2

Query: 359 GTTKSLFALWQTVKFQIRIKNDEFRQYLGSNPEDVYKEYTKDSYGWSVVNRSLRNHRN 532
           GTT S  A+W+T   +I I ND   Q   + P  V    T+   G +  N++  N RN
Sbjct: 14  GTTYSCVAVWETANVEI-IPND---QGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 248 IIKASSLPYDIHWLGGPTTIEREIPSSKKAIDIYCYTG 361
           I K +S P DIHW  G +   +         D + +TG
Sbjct: 132 ITKYTSQPVDIHWKPGKSLFRKNKKLPPNFFDYFQWTG 169


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 601 LVQRVDLWRVILMAAGIALIFSSKSLS 681
           L +++D+  +ILM AG+AL+  S SL+
Sbjct: 293 LFKKLDIIGLILMTAGLALVLLSISLA 319


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 407 IRIKNDEFRQYLGSNPEDVYKEYTKDSYGWSVVNRSLRN 523
           +R+KNDE +  L ++PE+   +  K  Y   V+N+ +RN
Sbjct: 59  VRVKNDEIQLLLQNSPENA--DVPK-IYNLRVMNKFVRN 94


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 383 LWQTVKFQIRIKNDEFRQYLGSNPEDVYKEYTKDSYGWSVVNRSLRN 523
           LW+ + F + + +  F  Y  +  +   K Y K SYG+ +   S R+
Sbjct: 34  LWKPITFAVGVGSATF--YTANYLDKRRKNYPKSSYGFPIPQTSSRS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,649
Number of Sequences: 5004
Number of extensions: 52468
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)