Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021271
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z78065-9|CAI79172.1|  273|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z78064-11|CAI79210.1|  273|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical...    28   7.2  
AF000196-4|AAC24254.2|  429|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical
           protein F57B1.1 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 314 EIPSSKKAIDIYCYTGTTKSLFALWQTVKFQI 409
           E+   K+A+ I+C    + S+F L QT+KF+I
Sbjct: 207 ELTILKQAVFIFCLFQISSSVFLLCQTIKFEI 238


>Z78065-9|CAI79172.1|  273|Caenorhabditis elegans Hypothetical
           protein F57B1.8 protein.
          Length = 273

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 314 EIPSSKKAIDIYCYTGTTKSLFALWQTVKFQI 409
           E+   K+AI I+C    + S+F L QTVKF++
Sbjct: 177 ELTILKQAILIFCPFQISSSVFLLCQTVKFEL 208


>Z78064-11|CAI79210.1|  273|Caenorhabditis elegans Hypothetical
           protein F57B1.8 protein.
          Length = 273

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 314 EIPSSKKAIDIYCYTGTTKSLFALWQTVKFQI 409
           E+   K+AI I+C    + S+F L QTVKF++
Sbjct: 177 ELTILKQAILIFCPFQISSSVFLLCQTVKFEL 208


>Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical
           protein C08F11.9 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 244 SINNTDILNSLIIFIYNCVYFRFITIQINYKCVKK 140
           ++ +TD +NSL++ +   V    + IQI+Y C  K
Sbjct: 255 ALPSTDFVNSLVLMVVTDVLVVPLIIQISYLCCNK 289


>AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical
           protein T12B5.4 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 133 NQ*KTLSLLFHYKQLNIIYDGFGVLDTYKRNSAIKNRME 17
           N+   +  LFH+++  + +D F +LD  K    +  R E
Sbjct: 200 NEKLQIGQLFHFEKFQVEFDNFSILDVTKVKEDLLKRSE 238


>AF000196-4|AAC24254.2|  429|Caenorhabditis elegans Hypothetical
           protein B0041.5 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 493 TVAIFCILFINIFWI*AKVLTKFI 422
           TV I  +L +N+ W+ +  LT+FI
Sbjct: 16  TVGICLLLIVNVLWVLSSELTRFI 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,632,911
Number of Sequences: 27780
Number of extensions: 287000
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)