Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021271
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containi...    32   0.41 
At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase fa...    29   2.2  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.1  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    28   6.7  
At1g13810.1 68414.m01621 expressed protein ; expression supporte...    28   6.7  

>At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containing
           protein low similarity to RNA binding protein PufA
           [Dictyostelium discoideum] GI:5106561; contains Pfam
           profile PF00806: Pumilio-family RNA binding repeat
          Length = 477

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 350 CY-TGTTKSLFALWQTVKFQIRIKNDEFRQYLGSNPEDVYKEYTKDSYGWSVVNRSLRN 523
           CY T T KSL      V++ +R+K+ E    L  + +  Y + + D YG  VV + L +
Sbjct: 346 CYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLES 404


>At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 649

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +2

Query: 278 IHWLGGPTTIEREIPSSKKAIDIYCYTGTTKSLFALWQTVKFQIRIKNDEFRQYLGSNPE 457
           IHWL     I   +P  ++  D+       +    L++    + R +N+    YL  +PE
Sbjct: 352 IHWLD-EAIIGDMLPQYERRNDMRQVLDRDRRQRCLFKRFSDEDRARNEAIA-YLLDHPE 409

Query: 458 DVYKEYTKDSYGWSVVNRSL 517
           D ++  ++  YG+S V R++
Sbjct: 410 DGHRSQSEQIYGFSRVRRAV 429


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 689 GLPLRDFEEKMSAMPAAISMTRHRSTLCTSRSILGFL*C 573
           G  L  FE ++ ++PAA S      TLC    I G   C
Sbjct: 52  GFSLNSFESRLISIPAAWSGRIWGRTLCNQNEITGIFTC 90


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 434 QYLGSNPEDVYKEYTKDSYGWSVVNRSLRNHRN 532
           QY  +NPE  + +  + +Y W    RS + H N
Sbjct: 619 QYTTANPEGGHPQIVEGAYAWGFDIRSWKKHLN 651


>At1g13810.1 68414.m01621 expressed protein ; expression supported
           by MPSS
          Length = 303

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 338 IDIYCYTGTTKSLFALWQTVKF 403
           +D+YC+T    SLF +W+   F
Sbjct: 208 LDLYCWTRNGSSLFRVWRDTAF 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,947
Number of Sequences: 28952
Number of extensions: 252598
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)