Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021269
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    44   1e-06
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.1  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   5.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   5.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   5.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +3

Query: 336 EVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLM 199



 Score = 25.4 bits (53), Expect = 0.33
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 511 TGSGKTLAYILPAIVH 558
           TGSGKT A++LP I+H
Sbjct: 204 TGSGKTAAFMLP-IIH 218


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 247  LQPSTKTFMIHILQFS----KDHHMKSKSTEIITRYL*VALRF 363
            L  S K ++   ++F     K+HH+K  + +  T+Y  V   F
Sbjct: 1037 LANSDKPYLFETVEFGREEGKEHHLKISNLKTYTQYSVVVQAF 1079


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +3

Query: 291 LKRSPYEVEEYRNNHEV--SVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 464
           LKR  Y++ +     EV  S+  VEVH  +    E  F     QG   + +    P  +Q
Sbjct: 70  LKR--YKLNDLEKRREVYESIFKVEVHEALMSRGERRFSHKALQGAIMITFYRDEPRFSQ 127

Query: 465 GWPIAMSGKNLVGVLNGFRQN 527
              I     ++  ++  +R N
Sbjct: 128 PHQILTLLMDIDSLITKWRYN 148


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +3

Query: 291 LKRSPYEVEEYRNNHEV--SVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 464
           LKR  Y++ +     EV  S+  VEVH  +    E  F     QG   + +    P  +Q
Sbjct: 230 LKR--YKLNDLEKRREVYESIFKVEVHEALMSRGERRFSHKALQGAIMITFYRDEPRFSQ 287

Query: 465 GWPIAMSGKNLVGVLNGFRQN 527
              I     ++  ++  +R N
Sbjct: 288 PHQILTLLMDIDSLITKWRYN 308


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +3

Query: 291 LKRSPYEVEEYRNNHEV--SVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 464
           LKR  Y++ +     EV  S+  VEVH  +    E  F     QG   + +    P  +Q
Sbjct: 230 LKR--YKLNDLEKRREVYESIFKVEVHEALMSRGERRFSHKALQGAIMITFYRDEPRFSQ 287

Query: 465 GWPIAMSGKNLVGVLNGFRQN 527
              I     ++  ++  +R N
Sbjct: 288 PHQILTLLMDIDSLITKWRYN 308


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 434 LQRTDAYSSSRLADSYVW 487
           L  T  Y SSR +DS +W
Sbjct: 13  LYLTAIYVSSRKSDSGIW 30


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory
          receptor candidate 50 protein.
          Length = 350

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 80 AIIPVTRHD*FSDLVEDVYL 21
          A++PV +H     LV  VYL
Sbjct: 18 ALLPVKKHHRLEKLVPCVYL 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,448
Number of Sequences: 336
Number of extensions: 2582
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)