Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021269
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 4e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 53 3e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 50 2e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 2e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 42 6e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 35 0.007
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.009
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.012
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.022
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.028
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 0.087
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 31 0.087
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.61
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 1.9
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 1.9
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 1.9
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 4.3
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 4.3
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 5.7
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.7
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.5
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 7.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.5
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 10.0
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 10.0
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 10.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 10.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 10.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99.1 bits (236), Expect = 4e-22
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +3
Query: 255 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 434
F K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + VK +G
Sbjct: 82 FQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLG 141
Query: 435 YKEPTPIQAQGWPIAMSGKNLVGV 506
++ PTPIQ Q WP+AMSG+++VG+
Sbjct: 142 FEAPTPIQQQAWPMAMSGRDMVGI 165
Score = 33.5 bits (73), Expect = 0.022
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL+Y LPAIVH
Sbjct: 168 TGSGKTLSYCLPAIVH 183
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.8 bits (121), Expect = 3e-08
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 FNKNFYDPHPTVLKRSPYEVEEYRNNHE-VSVSGVEVHNPIQYFEEANFPDYVQQGVKTM 431
F K+FY + SP EV+E R + + + + G++ P+ + + + ++
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 432 GYKEPTPIQAQGWPIAMSGKNLVGV 506
GY++PT IQAQ P SG++++GV
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGV 461
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKT+A++LP H
Sbjct: 464 TGSGKTIAFLLPMFRH 479
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 50.4 bits (115), Expect = 2e-07
Identities = 19/61 (31%), Positives = 39/61 (63%)
Frame = +3
Query: 324 RNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 503
+ ++ +S+ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 504 V 506
+
Sbjct: 292 I 292
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 511 TGSGKTLAYILPAIV 555
TGSGKT A+I+P I+
Sbjct: 295 TGSGKTAAFIIPLII 309
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +3
Query: 315 EEYRNNHEVSVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 485
+ Y H +S + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 486 GKNLVGV 506
G+++VG+
Sbjct: 202 GRDVVGI 208
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 41.9 bits (94), Expect = 6e-05
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 339 VSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.1 bits (77), Expect = 0.007
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 503
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 34.7 bits (76), Expect = 0.009
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGL 89
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKT A+ LP I
Sbjct: 92 TGSGKTAAFALPVI 105
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.012
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 511 TGSGKTLAYILP 546
TGSGKTLAY+LP
Sbjct: 47 TGSGKTLAYLLP 58
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 33.5 bits (73), Expect = 0.022
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 351 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKT AY++P +
Sbjct: 60 TGSGKTAAYLIPIL 73
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.1 bits (72), Expect = 0.028
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + G+ G++ P+PIQ + PIA+SG++++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 31.5 bits (68), Expect = 0.087
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +3
Query: 315 EEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 494
+E N E++ S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 495 LV 500
++
Sbjct: 61 VI 62
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 31.5 bits (68), Expect = 0.087
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
F+ + + + G+K PTPIQ + P+ + G+++VG+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGM 112
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKT A+++P I H
Sbjct: 115 TGSGKTAAFVIPMIEH 130
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.61
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLAY+LP +
Sbjct: 187 TGSGKTLAYLLPIV 200
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLA+++P I
Sbjct: 135 TGSGKTLAFLIPTI 148
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 1.9
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLA+I+P I
Sbjct: 85 TGSGKTLAFIVPLI 98
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKT+AY+ P +
Sbjct: 92 TGSGKTIAYLFPIL 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTLA+ +P + H
Sbjct: 168 TGSGKTLAFGIPILEH 183
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 258 NKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNP 371
N ++YD +LK+ + E +R N SV EV NP
Sbjct: 343 NNDYYDNAARILKQMFHVAERHRRNRVPSVQ--EVLNP 378
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 PTFNKNFYDPHPTVLKRSPYEVEEYRNNHEV-SVSGVEVHN 368
PT +KN + H ++ PY+V++ + E+ +VS V +
Sbjct: 115 PTTSKNKHPSHSNTIRSPPYKVKKESCHTEINNVSNVSTES 155
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 432 PLSLHLVAHNQENL--LLQSIE 373
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 243 FTPTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQ 377
FT FYDP P LK + +E+ + + V +H P+Q
Sbjct: 118 FTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 321 YRNNHEVSVSGVEVHNPIQYFE 386
Y N+ ++ G EVHNP FE
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFE 311
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 511 TGSGKTLAYILPAIV 555
TG GK+L Y LPA++
Sbjct: 543 TGGGKSLCYQLPAVI 557
>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 526 FCRNPFSTPTKFFPDIAIGQP 464
FC NP S FP IAI P
Sbjct: 50 FCINPKSIRNFLFPPIAISDP 70
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 161 DLEDLE-DLVGKKNSLEVRTCVAQIGILFHSNLQQKLL*STSYSSQKITI*SRRV 322
D LE +L+ + + + R +A++ L H KL TS+++ ++ + RV
Sbjct: 238 DQRTLEYELLNRFHVISKRIDIAELNSLIHDKSSNKLYMKTSFTTYEVAVVYYRV 292
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 425 DNGLQRTDAYSSSRLADSYVWKE 493
DN + R+D +SS + D YV +E
Sbjct: 259 DNSVLRSDDFSSKAVFDKYVERE 281
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 10.0
Identities = 7/15 (46%), Positives = 14/15 (93%)
Frame = +1
Query: 511 TGSGKTLAYILPAIV 555
TG GK+L++++PA++
Sbjct: 1215 TGGGKSLSFLIPALI 1229
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 10.0
Identities = 7/15 (46%), Positives = 14/15 (93%)
Frame = +1
Query: 511 TGSGKTLAYILPAIV 555
TG GK+L++++PA++
Sbjct: 1215 TGGGKSLSFLIPALI 1229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,565
Number of Sequences: 5004
Number of extensions: 41278
Number of successful extensions: 135
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -