Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021269
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 9e-14
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 59 2e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 57 8e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 57 1e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 52 4e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 3e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 3e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 34 0.069
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 31 0.48
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 31 0.84
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 31 0.84
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 30 1.5
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39) 29 1.9
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 1.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 1.9
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 29 3.4
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 3.4
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 5.9
SB_23754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 73.7 bits (173), Expect = 9e-14
Identities = 30/84 (35%), Positives = 49/84 (58%)
Frame = +3
Query: 255 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 434
FNKNFY+ HP + K+S E+++ R + VSG P F F + + ++ +
Sbjct: 477 FNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRKLE 536
Query: 435 YKEPTPIQAQGWPIAMSGKNLVGV 506
Y +PT IQ Q PIA+SG++++G+
Sbjct: 537 YTQPTQIQCQALPIALSGRDIIGI 560
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKT A++ PA+VH
Sbjct: 563 TGSGKTAAFLWPALVH 578
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +3
Query: 297 RSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 464
R +EV+ YR + +++V+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +3
Query: 255 FNKNFYDPHPTVLKRSPYEVEEYRNNHE-VSVSGVEVHNPIQYFEEANFPDYVQQGVKTM 431
F K+FY P + K +P E +E+R + E + V G P++ + + + +K
Sbjct: 64 FRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLKKN 123
Query: 432 GYKEPTPIQAQGWPIAMSGKNLVGVLNGFRQNVGLHLASHC 554
Y++PTPIQAQ P+ MSG++++ ++ + + + + C
Sbjct: 124 SYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHREC 164
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 57.2 bits (132), Expect = 8e-09
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +3
Query: 270 YDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 449
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 450 PIQAQGWPIAMSGKNLV 500
PIQ Q P+ +SG++++
Sbjct: 221 PIQMQVLPVLLSGRDVM 237
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +3
Query: 321 YRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
+R + +S G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 501 GV 506
GV
Sbjct: 143 GV 144
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/84 (28%), Positives = 44/84 (52%)
Frame = +3
Query: 255 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 434
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 435 YKEPTPIQAQGWPIAMSGKNLVGV 506
++ PTPIQ Q MSG++++G+
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGL 115
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 309 EVEEYRNNHEVSVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 476
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 477 AMSGKNLVG 503
G G
Sbjct: 197 MAHGPKKSG 205
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 336 EVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 752
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 336 EVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 175
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +3
Query: 267 FYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 446
F D T +K YE N VSG I F E F + + + GY+ P
Sbjct: 449 FQDAPHTGIKFDNYE------NIPSKVSGENQPPKITSFNELPFGEQLMANISRAGYRRP 502
Query: 447 TPIQAQGWPIAMSGKNLV 500
TP+Q PI M+G++L+
Sbjct: 503 TPVQKAALPIVMAGRDLM 520
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 34.3 bits (75), Expect = 0.069
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 372 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 503
++ F + G+ G+ PT IQ QG P+A+SG++++G
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLG 92
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 372 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
I FE+ + + + V GYK+PTP+Q PI ++L+
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLM 916
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 414 QGVKTMGYKEPTPIQAQGWPIAMSGKNL 497
+ V +G+ PTPIQA P+A+ GK++
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDV 50
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 0.84
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 357 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 470
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.7 bits (66), Expect = 0.84
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + G+ G+ +P+PIQ + P+A++G++++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDIL 88
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.7 bits (66), Expect = 0.84
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + G+ G+ +P+PIQ + P+A++G++++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDIL 88
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 246 TPTFNKNFY-DPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQ-YFEEANFPDYVQQG 419
TP N Y P P V + S Y +Y + S+ +P+ + ++ P Y+QQ
Sbjct: 330 TPGMNGAAYGQPPPLVNQISQYNGSQYNQSLHYSLPSTFQISPVTPSLQPSSVPFYLQQD 389
Query: 420 VKTMGYKEPTPIQAQGWPIAMSGKNL 497
++ +G + Q P+A SG+ +
Sbjct: 390 LEALGRISQPRVSPQSRPLA-SGQQV 414
>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
Length = 411
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 253 VGVKQNPNLGDACSDLQRILFSHQ--ILQILQIYCHRL 146
+GVKQ P L +CS++Q F+H I I CH L
Sbjct: 269 IGVKQQPPLLPSCSEIQSEHFAHTSGIFPIALTPCHPL 306
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 333 HEVSVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 485
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 267 FYDPHPTVLKRSPYEVEEYRNN--HEVSVSGVEVHNPIQYFEEANFPDY 407
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 234 GFCFTPTFNKNFYD----PHPTVLKRSPYEVEEYRNNHEVSVSGVEVHN 368
G+ TF K + D P P +KR P E ++ + H+V G E+HN
Sbjct: 66 GYELGVTFLKRWVDVEQHPIPRTIKRDPPEKQD--DEHDVGKDGGEIHN 112
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 211 QNMRRPDWDSVSLQPSTKTFMIHILQFSKDHHMKSKSTEIITRYL 345
+NM +P W S F+ ++L F KD + ++ E++ YL
Sbjct: 3073 RNMLKPSWSESLKLMSKSDFLNNLLNFDKD-SINDETVELLAAYL 3116
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 147 CQIETNYRRICCLLQIWN-HRFHGYYSS 67
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_23754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 191 KKNSLEVRTCVAQIGILFHSNLQQKL 268
+K +L ++ C+A GI FH Q+KL
Sbjct: 147 RKTALNLQACLAVSGIAFHGYAQRKL 172
>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1485
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 309 EVEEYRNNHEVSVSGVEVHNPIQYFEEANF---PDY 407
+++ YR +++VS SG E+ +Y + +NF PDY
Sbjct: 95 DLQSYRASYQVSSSGCELLEEDRYSKPSNFSSNPDY 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,287
Number of Sequences: 59808
Number of extensions: 291344
Number of successful extensions: 817
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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