Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021269
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       56   3e-10
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 55.6 bits (128), Expect = 3e-10
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +3

Query: 327 NNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
           +N +V+VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLM 237



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 511 TGSGKTLAYILPAI 552
           TGSGKT A+ +P I
Sbjct: 242 TGSGKTAAFAVPII 255


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 234 PIWATHVLTSREFFFP 187
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 67  TGIIAVETVVPNLEEATNSA 126
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 234 PIWATHVLTSREFFFP 187
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -3

Query: 235 PNLGDACSDLQRILFSHQILQILQIYCHRLPNRD 134
           PN+    +D   +     ++Q+LQ     +PN++
Sbjct: 18  PNVKQRAADQDLLNKQQDVIQLLQKISQPIPNQE 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,404
Number of Sequences: 438
Number of extensions: 2871
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)