Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021269
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 99 1e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 9e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 97 9e-21
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 72 2e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 72 3e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 72 3e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 72 3e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 65 3e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 65 3e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 64 5e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 58 4e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 54 6e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 4e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 9e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 3e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 3e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 41 6e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 39 0.003
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.005
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.010
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.014
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 36 0.014
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 35 0.032
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 35 0.032
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 35 0.032
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 33 0.098
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 32 0.30
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 32 0.30
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.39
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.39
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 31 0.39
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 31 0.52
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 29 1.6
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.1
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.8
At3g58200.1 68416.m06489 meprin and TRAF homology domain-contain... 29 2.8
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 28 3.7
At2g33420.1 68415.m04096 expressed protein 28 3.7
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 3.7
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 3.7
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 4.9
At2g25460.1 68415.m03049 expressed protein 27 6.4
At2g05940.1 68415.m00645 protein kinase, putative similar to aux... 27 6.4
At1g60460.1 68414.m06807 hypothetical protein 27 6.4
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 27 8.5
At3g19515.1 68416.m02473 expressed protein 27 8.5
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.5
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.5
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.5
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 27 8.5
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 27 8.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 99 bits (238), Expect = 1e-21
Identities = 43/87 (49%), Positives = 59/87 (67%)
Frame = +3
Query: 246 TPTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVK 425
TP F KNFY P V + EVEEYR E++V G ++ P++ F + FPDYV + VK
Sbjct: 57 TP-FEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 426 TMGYKEPTPIQAQGWPIAMSGKNLVGV 506
G+ EPTPIQ+QGWP+AM G++L+G+
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGI 142
Score = 34.7 bits (76), Expect = 0.042
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL+Y+LPAIVH
Sbjct: 145 TGSGKTLSYLLPAIVH 160
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 96.7 bits (230), Expect = 9e-21
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3
Query: 225 PRLGFCFTPTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPD 404
P+ F F KNFY PTV + +V YR ++SV G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 405 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
Score = 35.1 bits (77), Expect = 0.032
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTLAY+LPA+VH
Sbjct: 211 TGSGKTLAYLLPALVH 226
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 96.7 bits (230), Expect = 9e-21
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3
Query: 225 PRLGFCFTPTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPD 404
P+ F F KNFY PTV + +V YR ++SV G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 405 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
Score = 35.1 bits (77), Expect = 0.032
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTLAY+LPA+VH
Sbjct: 211 TGSGKTLAYLLPALVH 226
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.1 bits (169), Expect = 2e-13
Identities = 28/83 (33%), Positives = 49/83 (59%)
Frame = +3
Query: 258 NKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 437
NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K Y
Sbjct: 189 NKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAY 248
Query: 438 KEPTPIQAQGWPIAMSGKNLVGV 506
++PT IQ Q PI +SG++++G+
Sbjct: 249 EKPTAIQCQALPIVLSGRDVIGI 271
Score = 30.7 bits (66), Expect = 0.69
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKT A++LP IVH
Sbjct: 274 TGSGKTAAFVLPMIVH 289
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +3
Query: 276 PHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 455
P P+ S E Y HE++VSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 456 QAQGWPIAMSGKNLVGV 506
QAQ WPIAM G+++V +
Sbjct: 185 QAQSWPIAMQGRDIVAI 201
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL Y++P +H
Sbjct: 204 TGSGKTLGYLIPGFLH 219
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +3
Query: 276 PHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 455
P P+ S E Y HE++VSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 456 QAQGWPIAMSGKNLVGV 506
QAQ WPIAM G+++V +
Sbjct: 185 QAQSWPIAMQGRDIVAI 201
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL Y++P +H
Sbjct: 204 TGSGKTLGYLIPGFLH 219
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +3
Query: 276 PHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 455
P P+ S E Y HE++VSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 456 QAQGWPIAMSGKNLVGV 506
QAQ WPIAM G+++V +
Sbjct: 185 QAQSWPIAMQGRDIVAI 201
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL Y++P +H
Sbjct: 204 TGSGKTLGYLIPGFLH 219
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +3
Query: 255 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 434
F KNFY + + + V YR E+ V G +V PIQ++ + + +K +
Sbjct: 356 FRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLN 415
Query: 435 YKEPTPIQAQGWPIAMSGKNLVGV 506
Y++P PIQAQ PI MSG++ +GV
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGV 439
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL ++LP + H
Sbjct: 442 TGSGKTLGFVLPMLRH 457
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 64.9 bits (151), Expect = 3e-11
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Frame = +3
Query: 249 PTF-NKNFYDPH----PTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQ 413
P F NK+ PH P V SP E+ YR HEV+ +G + P FE + P +
Sbjct: 390 PAFPNKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEIL 447
Query: 414 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
+ + + G+ PTPIQAQ WPIA+ +++V +
Sbjct: 448 RELLSAGFPSPTPIQAQTWPIALQSRDIVAI 478
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 511 TGSGKTLAYILPAIV 555
TGSGKTL Y++PA +
Sbjct: 481 TGSGKTLGYLIPAFI 495
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +3
Query: 255 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 434
F KNFY + + + EV YR E+ V G +V PI+++ + + +K +
Sbjct: 489 FRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLN 548
Query: 435 YKEPTPIQAQGWPIAMSGKNLVGV 506
Y++P PIQ Q PI MSG++ +GV
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGV 572
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL ++LP + H
Sbjct: 575 TGSGKTLGFVLPMLRH 590
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/91 (29%), Positives = 51/91 (56%)
Frame = +3
Query: 234 GFCFTPTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQ 413
G +T + ++ P V K S +++ R ++V+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 414 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
+ +K G PTPIQ QG P+ +SG++++G+
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGI 140
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 511 TGSGKTLAYILPAIV 555
TGSGKTL ++LP I+
Sbjct: 143 TGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 54.0 bits (124), Expect = 6e-08
Identities = 24/79 (30%), Positives = 45/79 (56%)
Frame = +3
Query: 270 YDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 449
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 450 PIQAQGWPIAMSGKNLVGV 506
PIQ QG P+ ++G++++G+
Sbjct: 171 PIQVQGLPVILAGRDMIGI 189
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 44.8 bits (101), Expect = 4e-05
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +3
Query: 321 YRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
+R + +S G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 501 GV 506
G+
Sbjct: 355 GI 356
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 324 RNNHEVSVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 491
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 342 SVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 497
+V GV H F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 309 EVEEYRNNHEVSVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 482
E E + V+ GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 483 SGKNLVGV 506
G++L+G+
Sbjct: 150 DGRDLIGI 157
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTLA+ +PAI+H
Sbjct: 160 TGSGKTLAFGIPAIMH 175
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 300 SPYEVEEYRNNHEVSVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 473
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 474 IAMSGKNLV 500
A++GK+L+
Sbjct: 143 AALTGKSLL 151
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 420 VKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
V + G+ P+PIQAQ WPIAM +++V +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAI 272
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 315 EEYRNNHEVSVSGVEVHNPIQYFEEANFPD 404
E Y HE++VSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TGSGKTL Y++P +H
Sbjct: 275 TGSGKTLGYLIPGFMH 290
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
FE N V +K GYK PTPIQ + P+ +SG ++V +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAM 71
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 339 VSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
+ SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLM 200
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 36.3 bits (80), Expect = 0.014
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 357 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGL 52
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 249 PTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKT 428
P N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 429 MGYKEPTPIQAQGWPIAMSGKNLV 500
Y +PTP+Q PI +G++L+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLM 187
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.1 bits (77), Expect = 0.032
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 309 EVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 488
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 489 KNLV 500
K++V
Sbjct: 84 KDVV 87
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLAY+LP +
Sbjct: 92 TGSGKTLAYLLPLL 105
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.1 bits (77), Expect = 0.032
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 339 VSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.1 bits (77), Expect = 0.032
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 339 VSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 33.5 bits (73), Expect = 0.098
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +3
Query: 285 TVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 464
T K EVE+ ++ + + + FE + D + +K MG+ T IQA+
Sbjct: 127 TEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKEMGFARMTQIQAK 183
Query: 465 GWPIAMSGKNLVG 503
P M G++++G
Sbjct: 184 AIPPLMMGEDVLG 196
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLA+++PA+
Sbjct: 200 TGSGKTLAFLIPAV 213
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 369 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
PI+ F++ D V +GV GYK+P+ IQ + + G++++
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVI 63
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDIL 195
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 31.1 bits (67), Expect = 0.52
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 506
FE ++ + K +G ++PTP+Q P ++G++++G+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGL 101
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 429 MGYKEPTPIQAQGWPIAMSGKNLV 500
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 511 TGSGKTLAYILPAIVH 558
TG+GKT+AY+ P I H
Sbjct: 76 TGTGKTIAYLAPLIHH 91
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 381 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 500
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLAY+LP +
Sbjct: 156 TGSGKTLAYLLPIL 169
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLAY+LP +
Sbjct: 158 TGSGKTLAYLLPIV 171
>At3g58200.1 68416.m06489 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 319
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -2
Query: 530 NVLPEPV*YAN*ILSRHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMN 360
+VLP V + + + R+ ++ +++ T C+Y LL +I +C K L + N
Sbjct: 183 HVLPSQVEFVSRVFERYPEIASIFQAKKQHLRTACMYVLLSLIETLC--KSLEELSN 237
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLA+++PA+
Sbjct: 135 TGSGKTLAFLIPAV 148
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 2 SKRIHSLNKHLQLNPKI 52
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 249 PTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQ 416
P K D H +L P+E + + H+V + VE ++ E+ F + VQ+
Sbjct: 157 PQMPKQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 249 PTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDYVQQ 416
P K D H +L P+E + + H+V + VE ++ E+ F + VQ+
Sbjct: 233 PQMPKQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 2 SKRIHSLNKHLQLNPKI 52
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 138 ETNYRRICCLLQIWNHRFHGYY 73
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g05940.1 68415.m00645 protein kinase, putative similar to
auxin-regulated dual specificity cytosolic kinase
[Lycopersicon esculentum] gi|14484938|gb|AAK62821
Length = 462
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = +2
Query: 146 QPVAVDLEDLEDLVGKKNSLEVRTCVAQIGILFHSNL 256
QPVAV L DLE L G + L T V +G L H NL
Sbjct: 117 QPVAVKLLDLEGLQGHREWL---TEVMFLGQLKHKNL 150
>At1g60460.1 68414.m06807 hypothetical protein
Length = 356
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 378 YFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP-IAMSGKNLVGVLNGFR-QNVGLHLASH 551
+ E NFP YVQ + Y P + + P I++ K + L+ + ++ G L+SH
Sbjct: 195 FLEWDNFPSYVQIQIALHWYHNQYPTRQKNGPGISLLKKGIKNALDNLKAKHEGFLLSSH 254
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TG+GKT+A++LPAI
Sbjct: 428 TGTGKTVAFLLPAI 441
>At3g19515.1 68416.m02473 expressed protein
Length = 507
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 309 EVEEYRNNHEVSVSGVEVHNPIQYFEEANFPDY 407
E E N E + G HNP + EE +PD+
Sbjct: 387 ETESEEENPEDNQKGNPEHNPKEKSEEMQYPDF 419
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 270 YDPHPTVLKRSPYEVEEYRNNHEVSV-SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 446
Y +P+ + + + R E + SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 447 TPIQAQGWPIAMS 485
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 270 YDPHPTVLKRSPYEVEEYRNNHEVSV-SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 446
Y +P+ + + + R E + SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 447 TPIQAQGWPIAMS 485
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 270 YDPHPTVLKRSPYEVEEYRNNHEVSV-SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 446
Y +P+ + + + R E + SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 447 TPIQAQGWPIAMS 485
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLA++LP I
Sbjct: 62 TGSGKTLAFLLPFI 75
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 511 TGSGKTLAYILPAI 552
TGSGKTLA++LP I
Sbjct: 63 TGSGKTLAFLLPFI 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,971,967
Number of Sequences: 28952
Number of extensions: 206189
Number of successful extensions: 668
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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