Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021268
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    27   1.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   6.2  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   6.2  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   8.2  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 365 DSASCCQIDIASETSQRPNPPFQGTEALLVFIQVK 261
           + ++ C I I+S+++  P+P ++ TEA     + K
Sbjct: 397 EPSNVCDIQISSQSNCIPDPSYERTEASFTIFKAK 431


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 394 LIHLKLVFSQTPRAVARLI 338
           LIH+ L F Q PR +A +I
Sbjct: 46  LIHIPLSFLQQPRVIAEII 64


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 313 GRCEVSDAISIWQQLAESD*KQVLNGLKNSDLIRDHYTN 429
           G   V D  ++  QLA++  + VLN L    LIRD   N
Sbjct: 149 GAFTVGDVNALLDQLADASSEYVLNFLPYLTLIRDTRVN 187


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 937

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -2

Query: 382  KLVFSQTPRAVARLILRQKLRN-VQIPHSRALKHYSYL---YKLKMITVLIFK*YYAKKT 215
            KL+F   P    RL + QKL N   I ++  LK  S L   Y    ++ L++  +     
Sbjct: 767  KLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLI--A 824

Query: 214  FNKILFDVEN*LVAVDGAATSRKFSLNLNKERK 116
             +K+L  V   + AVD + T+  F+ NL  E K
Sbjct: 825  VHKLLKRVS--INAVDPSQTTSSFT-NLTTESK 854


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 317 RPNPPFQGTEALLVFIQVKNDHG-FDF 240
           R  PPF    AL V+ ++KN+ G  DF
Sbjct: 336 RSQPPFLTDMALRVYERIKNEEGSLDF 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,079
Number of Sequences: 5004
Number of extensions: 30250
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)