Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021268
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61440.1 68414.m06923 S-locus protein kinase, putative contai...    28   3.0  
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR...    27   6.9  
At1g75470.1 68414.m08766 purine permease-related contains Pfam p...    27   9.1  

>At1g61440.1 68414.m06923 S-locus protein kinase, putative contains
           similarity to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 792

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 9   ASLNLTFFVVLTEYTYSFIYNLIKHH 86
           ++++LT FV+L   T+ F  N +KHH
Sbjct: 423 STVSLTLFVILGFATFGFWRNRVKHH 448


>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein. A false
            intron was added between exons 2 and 3 to circumvent a
            frameshift caused by a sequencing error, as per Blake
            Meyers (bcmeyers@vegmail.ucdavis.edu)
          Length = 1308

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 406  NPSSLIHLKLVFSQTPRAVARLILRQKLRNVQIPHSRAL 290
            NP +L+ L + +S   +        +KL+N+++ HSR L
Sbjct: 1142 NPVNLVELNMPYSNMEKLWEGKKNLEKLKNIKLSHSREL 1180


>At1g75470.1 68414.m08766 purine permease-related contains Pfam
           profile PF03151: Domain of unknown function, DUF250; low
           similarity to purine permease [Arabidopsis thaliana]
           GI:7620007
          Length = 381

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 26/90 (28%), Positives = 41/90 (45%)
 Frame = -2

Query: 409 SNPSSLIHLKLVFSQTPRAVARLILRQKLRNVQIPHSRALKHYSYLYKLKMITVLIFK*Y 230
           S  +SL HL + +S     +        +RN QIP+    + ++  Y  +++  LIF  Y
Sbjct: 108 SGETSLKHLAITYSILCIYMFCQAFFSDVRN-QIPY----RVFTLTYTTQLLFTLIFSKY 162

Query: 229 YAKKTFNKILFDVEN*LVAVDGAATSRKFS 140
           Y    FN+  F +   L  + GA T   FS
Sbjct: 163 YNDIKFNRWTF-ISLILAVLAGAFTLYTFS 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,569,921
Number of Sequences: 28952
Number of extensions: 146744
Number of successful extensions: 278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)