Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021267
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   0.77 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   5.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.5  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 268 GAAPDARDADGNTPLHLVCKL 330
           G   D RDA GN  + ++CKL
Sbjct: 247 GIKVDIRDAYGNVKIPVLCKL 267


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 438 ADPHQHRQSAPVHHPQVSG 494
           ADP QH   APV    +SG
Sbjct: 267 ADPAQHDLGAPVIDAGMSG 285


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 89  KRAMDDRFPADGVDSEPIPKPKDV 160
           KRA  ++   D  ++ P+P P+ V
Sbjct: 96  KRAQHEKGMHDQQNNNPLPSPRRV 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,846
Number of Sequences: 336
Number of extensions: 1809
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)