Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021267
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    34   0.012
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    30   0.20 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    30   0.26 
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    29   0.61 
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        28   0.80 
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   5.7  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.9  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   9.9  

>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 268 GAAPDARDADGNTPLHLVCKLNPCPADVVRELLNHGAHIDTVNYEGETP 414
           G +P+A D +G TP+H         +D+++ L+  G  I+  + +GETP
Sbjct: 27  GISPNAADENGYTPIHAAVSYG--HSDLLKILVERGGDINIRDQDGETP 73


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 268  GAAPDARDADGNTPLHLVCKLNPCPADVVRELLNHGAHIDTVNYEGETPEEILKS 432
            G   + RDA G TPLH     +    D+   LL++GA  D +   G+ P ++  S
Sbjct: 885  GCDVNKRDALGYTPLHYASLYD--HKDICVNLLSNGAKPDVIGASGKKPIDLSSS 937


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 256 MLRLGAAPDARD-ADGNTPLHLVCKLNPCPADVVRELLNHGAHIDTVNYEGETPEE 420
           +L+LGA P ARD  +  TPL L        +++V  L+  GA +D V+  G T  E
Sbjct: 386 LLKLGANPSARDFLNSWTPLMLASATG--LSEIVSILVASGASVDEVDSSGWTAME 439


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 549 SIGVRHTCRVVSSSDGS-SGQTLEGGVPERIDDAGEGLLRGFEDL 418
           ++G +     VS +DG    Q L   V + +DD  EG   G+EDL
Sbjct: 32  TVGSKSFASSVSKNDGRLMQQMLRAFVNKALDDKAEGNFAGYEDL 76


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 277 PDARDADGNTPLHLVCKLNPCPADVVRELLNHGAHIDTVNYEG 405
           PD +D  G TPL +       P +V+ EL+N      T+   G
Sbjct: 64  PDEKDEAGWTPLMISINNRSVPDNVIEELINRSDVDPTITTRG 106


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 123 PSAGNLSSMARFHSVKAPTMSLLLST*VAPNSSSASMRCCL 1
           PS   + S+  FH V+  ++ LL      PN   A    CL
Sbjct: 212 PSLSRILSLFSFHGVRKESLELLWRASKYPNIQGAIALLCL 252


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 280 DARDADGNTPLHLVCKLNPCPADVVRELLNH-GAHIDTVNYEGETPEEILKSTQ 438
           +A D + NTPLHL         D+V  LL H   + + VN   +   ++  S Q
Sbjct: 83  NAYDKNKNTPLHLAAMAG--RQDIVEALLLHPDINYNLVNANNKKAYQVATSPQ 134


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 129 STPSAGNLSSMARFHSVKAPTMSLLLST*VAPNSSS 22
           STP+     S++    +  P+++ LL T + PNS S
Sbjct: 243 STPTGSTAYSLSSGGPIVHPSINALLLTPICPNSLS 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,682
Number of Sequences: 5004
Number of extensions: 30832
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)