Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021266
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.8  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   7.8  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.8  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.8  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 4   PSPDPIVIEQPSSNVSKHHQVQNQAYLTPAH--PEKPPSPSKQG*NPVRLLPPAFQMLRP 177
           P P P      +S +   +Q  N  YL  A   P+  P   +QG N  RLL P+ ++  P
Sbjct: 205 PFPPPYPFYPGTSAMLAAYQRYNP-YLQAASMLPKPTPLVPQQGFNMERLLAPSTEVSAP 263


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 513 FELSRLLSPWRTSQHH 560
           F LS  +SP+ +SQHH
Sbjct: 39  FPLSLGMSPYASSQHH 54


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 162 PNVATLSGPSEASKPDAPPNPLSS 233
           P+++T   P E      PPNPL +
Sbjct: 334 PHISTGFSPYEILYGRTPPNPLDA 357


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 537 PWRTSQHHRP 566
           PW+T  +HRP
Sbjct: 527 PWQTVYNHRP 536


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 241 VGSELKGLGGASGFE 197
           +GS   G GG+SG++
Sbjct: 157 IGSSQLGTGGSSGYQ 171


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 241 VGSELKGLGGASGFE 197
           +GS   G GG+SG++
Sbjct: 317 IGSSQLGTGGSSGYQ 331


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 241 VGSELKGLGGASGFE 197
           +GS   G GG+SG++
Sbjct: 317 IGSSQLGTGGSSGYQ 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,424
Number of Sequences: 336
Number of extensions: 2771
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)