Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021266
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    31   0.17 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   0.89 
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    28   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.7  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   3.6  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.8  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    22   4.8  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   6.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.3  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   6.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   6.3  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.3  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 51  KTSSGSKPSVPYTGSSGETPKPQ*T-RIKSGETLATGFPNVATLSGPSEASK-PDAPPNP 224
           K  + +KP+ P   S  ETP P+ T      ET A       T S  +E +K P AP   
Sbjct: 142 KAPTTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKSADAELAKTPSAPAAA 201

Query: 225 LSSDPTAHGPSSLIKN 272
           L     A  P+++ ++
Sbjct: 202 LKKAAEAAEPATVTED 217


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 21/87 (24%), Positives = 36/87 (41%)
 Frame = +3

Query: 3    SIP*PNCYRTTLV*RLKTSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLS 182
            S+P P+    ++  +L   S   P V  T      P P  T + S   ++   P +AT +
Sbjct: 1039 SVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSR--PPIATSA 1096

Query: 183  GPSEASKPDAPPNPLSSDPTAHGPSSL 263
            G S  +   + P    +   +H P +L
Sbjct: 1097 GRSSTAASTSAPLTYPAGDRSHIPGNL 1123


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 4   PSPDPIVIEQPSSNVSKHHQVQNQAYLTPAHPEKPPSPSKQG 129
           PS  P ++  PS+  S+HH   + +      P  P SP+  G
Sbjct: 104 PSNQPAMLS-PSTAASQHHHHHSSSSSYAVSPTSPTSPTSSG 144


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/69 (30%), Positives = 26/69 (37%)
 Frame = +3

Query: 54  TSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSS 233
           TSS S P  P + SS +T         +  T +T  P     S  S    P  PP   SS
Sbjct: 143 TSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSS 202

Query: 234 DPTAHGPSS 260
                 P+S
Sbjct: 203 TSIPIPPTS 211



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +3

Query: 54  TSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSS 233
           TSS S P  P + SS +T         +  T +T  P     + P     P  PP   SS
Sbjct: 256 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVT---PTVPPTSTSS 312

Query: 234 DPTAHGPSS 260
             T   P+S
Sbjct: 313 TSTPPPPAS 321



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 21/69 (30%), Positives = 26/69 (37%)
 Frame = +3

Query: 54  TSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSS 233
           TSS S P  P + SS  T         +  T +T  P     + P     P  PP   SS
Sbjct: 310 TSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT---PTVPPTSTSS 366

Query: 234 DPTAHGPSS 260
             T   P+S
Sbjct: 367 TSTPPPPAS 375


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 123  TRIKSGETLATGFPNVATL----SGPSEASKPDAPPNPLSSDPTAHGP 254
            T IK   T++   P  +T+    S PS  SKP AP     S P+A  P
Sbjct: 1049 TTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPP 1096


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 7   SPDPIVIEQPSSNVSKHHQVQNQAY-LTPAHPEKPPSPSKQG*NPV 141
           SP    +E PSSN S   Q+QN  + L+   P + P   +   NPV
Sbjct: 120 SPIVSALEPPSSNSSSSPQLQNLKHQLSSPQPSRAPI-DRSSSNPV 164


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 60  SGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVAT---LSGPSEASKPDAPPNP 224
           + S P +P   ++   P P   R+    + A+G    AT    + P +   P APP P
Sbjct: 174 TASSP-LPTASANAPLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKP 230


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 22.2 bits (45), Expect(2) = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 7   SPDPIVIEQPSSNVSK 54
           SPDP+    PS+NV++
Sbjct: 363 SPDPLQTAAPSANVNE 378



 Score = 21.8 bits (44), Expect(2) = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 43  NVSKHHQVQNQAYLTPAHPEKPPSP 117
           NVS   + ++ +  +P  PEKP  P
Sbjct: 404 NVSGSERTKSLSKESPVEPEKPALP 428


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  NPRLTSQNIIRFKTKRTLHRLIR 100
           NP L SQN IRF T+  +  +IR
Sbjct: 6   NPILLSQNSIRFATRVAIFFIIR 28


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
 Frame = +3

Query: 45  RLKTSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDA---- 212
           R  TS+  +PS+P    +   P P               P     S PS  S P A    
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197

Query: 213 ----PPNPLSSDPTAHGPS 257
               PP PLS  P A+  S
Sbjct: 198 PPKVPPPPLSQAPVANTSS 216


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 143 DSCHRLSKCCDPKRPLGSLKTRRP 214
           + CHR +     K P+G L+ RRP
Sbjct: 16  EKCHRFTGIRYAKPPVGKLRWRRP 39


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 162 PNVATLSGPSEASKPDAPPNPLSSDP 239
           P+V  LS  S A++PD    P  SDP
Sbjct: 121 PHVDGLSNHSPATQPDLFETPAQSDP 146


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 SSDPTAHGPSSLIKNFLAFHLPITSAP 308
           ++D   H PS+ I +F  ++LP+   P
Sbjct: 90  TNDDELHSPSASIHSFQTYNLPLEMLP 116


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/66 (27%), Positives = 25/66 (37%)
 Frame = +1

Query: 10  PDPIVIEQPSSNVSKHHQVQNQAYLTPAHPEKPPSPSKQG*NPVRLLPPAFQMLRP*AAP 189
           PD + +    S  S  H       L   H  + P P      P+    P++Q + P AAP
Sbjct: 66  PDTLSVRSGFSIPSSSHHPSAVPSLLSQHRLQQPQPRLYPSAPLNYYWPSYQSV-PSAAP 124

Query: 190 RKPQNQ 207
             P  Q
Sbjct: 125 PPPSQQ 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,984
Number of Sequences: 5004
Number of extensions: 47449
Number of successful extensions: 199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)