Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021266
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0855 + 25408783-25409397 33 0.13
02_01_0302 - 2021221-2023305 33 0.23
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 32 0.40
03_02_0738 - 10824121-10825572 31 0.52
11_04_0089 + 13383779-13384018,13384962-13385225 31 0.92
08_02_1085 + 24237804-24238403 31 0.92
11_06_0610 - 25449085-25453284 30 1.2
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 30 1.2
01_06_0856 - 32503824-32505014 30 1.2
11_02_0005 - 7264736-7264753,7265086-7265188,7265487-7265539,726... 30 1.6
03_06_0519 - 34481751-34482722 30 1.6
01_06_1354 - 36599904-36600643,36600851-36601352 30 1.6
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 29 2.1
06_03_1061 + 27282979-27286854 29 3.7
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 3.7
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 3.7
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 29 3.7
12_01_0349 + 2677347-2677424,2677548-2677631,2677717-2677821,267... 28 4.9
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 28 4.9
09_06_0120 - 20973635-20974879 28 4.9
07_03_1160 - 24430240-24431268 28 4.9
06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832 28 4.9
03_05_0955 + 29168771-29170507 28 4.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 4.9
12_02_0342 - 17742326-17742356,17742503-17742621,17743148-177431... 28 6.5
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 28 6.5
05_01_0106 + 702504-702687,702856-703037,703070-703933 27 8.5
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 27 8.5
03_02_0390 + 8056006-8057502 27 8.5
>06_03_0855 + 25408783-25409397
Length = 204
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 81 PYTGSSGETPKPQ*TRIKSGET-LATGFPN--VATLSGPSEASKPDAPPNPLSSD 236
P ++ TP P+ + + E +AT FPN + +GPS A P PP P +SD
Sbjct: 3 PELATAAATPLPEKRILTAHEVVMATLFPNGIFSYTAGPSHALPPPPPPPPAASD 57
>02_01_0302 - 2021221-2023305
Length = 694
Score = 32.7 bits (71), Expect = 0.23
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Frame = +3
Query: 57 SSGSKPSV-----PYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPD--AP 215
SSGS PS P +G G +P Q + T T P+ + S P S P P
Sbjct: 581 SSGSPPSPSSGYQPPSGQPGASPPTQ--HVPGAGTPTTTPPSHSHPSTPPSPSGPSFHPP 638
Query: 216 PNPLSSDPTAHGPSSLIKNFLAFHLPITSAP 308
P P + P +HG SS H P TS P
Sbjct: 639 PTPHNCSPPSHG-SSTGGGHGGGHPPSTSTP 668
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 7 SPDPIVIEQPSSNVSKHHQVQNQAYLTPAHPEKPPSPS 120
S P PSS+ + + Q + TP+HP PPS S
Sbjct: 489 STTPSYPSPPSSSTTPSYHSPPQGHTTPSHP-SPPSSS 525
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 72 PSVPYTGSSGE-TPKPQ*TRIKSGETLATGFPNVAT-LSGPSEASKPDAPPNP-LSSD 236
P P T +G T +PQ + I SG T ++ FP+ +T S PS +S P P LSS+
Sbjct: 196 PVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFSTPASAPSSSSLFSTPTTPTLSSN 253
>03_02_0738 - 10824121-10825572
Length = 483
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 72 PSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSSDPTAHG 251
P + +SG+ P P+ RI+ A VA + P S P + P PLS P
Sbjct: 41 PCTIFFFTSGDVPLPR-IRIEYARRDAPTITAVAADTSPPPPSPPSSSPPPLSFPPPPPP 99
Query: 252 PSS 260
PSS
Sbjct: 100 PSS 102
>11_04_0089 + 13383779-13384018,13384962-13385225
Length = 167
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -1
Query: 238 GSELKGLGGASGFEASEGPLRVATFGKPVARVSP 137
GS+ G GGA G + E PL VAT PV SP
Sbjct: 64 GSKRVGRGGAKGITSGEIPLYVATKMSPVQGNSP 97
>08_02_1085 + 24237804-24238403
Length = 199
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +3
Query: 51 KTSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLS 230
K+SS S S S + P P + KSG+ A P A PS K +AP
Sbjct: 33 KSSSSSNSSSGSHTSPSKAPSPSKSPEKSGKAPAAAPPKAAAAKAPS--GKSEAPSEAPD 90
Query: 231 SDPTAHGPSS 260
++ A P +
Sbjct: 91 AESGAESPEA 100
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +3
Query: 72 PSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSSDP 239
P Y S+ E P S P AT+S P KP PP P+SS P
Sbjct: 1091 PEKSYPPSTPEESSPPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPPVPVSSPP 1146
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 72 PSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSS 233
PS P ++G P+P + + + + P+ +S PS AS PNP+S+
Sbjct: 41 PSTPTNPTTGR-PRPLPSDTTAAASTCSASPSHTPVSKPSSASGETTAPNPISA 93
>01_06_0856 - 32503824-32505014
Length = 396
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 162 PNVATLSGPSEASKPDAPPNPLSSDPTAHGPSSLIKNF 275
P AT+S S A P A P P ++D + H PS ++++F
Sbjct: 120 PAAATVSRRSAA--PPAAPAPAAADVSHHSPSEVLRSF 155
>11_02_0005 -
7264736-7264753,7265086-7265188,7265487-7265539,
7265791-7265880,7266093-7266217,7266528-7266753
Length = 204
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 162 PNVATLSGPSEASKPDAPPNPLSSDPTAHGPS 257
P AT+S P +KP PP+P PTA P+
Sbjct: 31 PGAATVSAPKPKAKPPPPPSP-PPLPTAPAPT 61
>03_06_0519 - 34481751-34482722
Length = 323
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 45 RLKTSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSG-PSEASKPDAPPN 221
R K +G P P +G+T P T + + A P + SG PS A K +
Sbjct: 182 RSKRLAGEAPETPV--EAGQT-SPSSTTARQSKRSAGKSPAIPKGSGQPSSAEKSKRTAD 238
Query: 222 PLSSDPTAHGPSSL 263
S+DP PSSL
Sbjct: 239 ASSADPAEARPSSL 252
>01_06_1354 - 36599904-36600643,36600851-36601352
Length = 413
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 177 LSGPSEASKPDAPPNPLSSDPTAHGPSSL 263
+S + AS P PPNP ++D T P+S+
Sbjct: 1 MSSETAASPPPPPPNPPAADSTHSSPASM 29
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 57 SSGSKPSVPYTGSSGETPK-PQ*TRIKSGETLATGFPNVATLSGP 188
+SG P +P + SS P P SG+ A G P + GP
Sbjct: 50 ASGGSPDLPSSSSSSSPPPTPAAASFGSGDEQAAGSPGFCIIEGP 94
>06_03_1061 + 27282979-27286854
Length = 1291
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 293 DHECTFLNRKRLNVSTLPFPAQPCLLVAFAQASNSTPQRVWAHLCTLFP 439
+H C FLNR + P P LL+++ S QR + + C +FP
Sbjct: 432 EHWCKFLNRNIWELKQEPDDVMPVLLLSYQHLPLSL-QRCFTY-CAIFP 478
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +3
Query: 57 SSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSSD 236
SS S PSV G + TP + ++ PN + P +PP P ++
Sbjct: 13 SSSSSPSVAL-GLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATP 71
Query: 237 PTAHGP 254
P A P
Sbjct: 72 PLAASP 77
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 78 VPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSSDPTAHGPS 257
+PY SSG+ PQ + A +P+ A L + PNP + DP A GP+
Sbjct: 2 MPY--SSGDRGLPQ--PAPAPPHAAMSWPSAALLFAVDRHRLAEHYPNPTALDPLARGPT 57
Query: 258 S 260
S
Sbjct: 58 S 58
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 162 PNVATLSGPSEASKPDAPPNPLSSDPTAHGPSS 260
P+ ++L+ S PP+P SS A GPSS
Sbjct: 38 PSSSSLADASSPPPSPPPPHPSSSSAAAQGPSS 70
>12_01_0349 +
2677347-2677424,2677548-2677631,2677717-2677821,
2678217-2678363,2678987-2679244,2679337-2679468,
2679550-2679570
Length = 274
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 356 EQGKEALTH*VACDLKRCTRDREMKCQKVLYEGGGPMSCWIGT 228
EQ ++ + H V+ +K C ++ ++ E GG W+GT
Sbjct: 80 EQERDNIEHEVSVFVKACKEQIDILKNRIHEEKGGSTKTWLGT 122
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +2
Query: 236 SNSSWALLPHKELFGISSPDHECTFLNRKRLNVSTLPFPAQPCLLVAFAQASNSTP 403
S+ S A LPH++ ++ P L RL S P P+ AFA ASN P
Sbjct: 16 SSPSRARLPHRQALALTPP-----LLRPHRL-YSHSPKPSSSAAFSAFASASNGAP 65
>09_06_0120 - 20973635-20974879
Length = 414
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 195 ASKPDAPPNPLSSDPTAHGPSSLIKNFLAFHLPITSAPF*IASDSM 332
AS P PPNP + +PT+ P A +AP S S+
Sbjct: 16 ASSPSLPPNPAAGNPTSSPPQGNPSAAAAVGAAAAAAPTLTTSPSL 61
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 162 PNVATLSGPSEASKPDAPPNPLSSDPTAHGPS 257
P L E S+PD PP P+S P P+
Sbjct: 142 PKPDGLPNTYEPSRPDQPPQPISDGPPLPNPN 173
>06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832
Length = 118
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 186 PSEASKPDAPPNPLSSDPTAHGP 254
PS SKP P DP+ HGP
Sbjct: 56 PSSESKPPPAVTPSDDDPSRHGP 78
>03_05_0955 + 29168771-29170507
Length = 578
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 1 LPSPDPIVIEQPSSNVSKHHQVQNQAYLTPAHPEKPPSPSKQ 126
LP P P P + KHH Q PA P+ PPS Q
Sbjct: 38 LPPPPPPQSMAPHHHQQKHHHHHQQ---MPAMPQAPPSSHGQ 76
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Frame = +3
Query: 57 SSGSKPSVPYTGSSGETP---KPQ*TRIKSGETLATG-FPNVATLS----GPSEASKPDA 212
SSG+ P+ P G S TP P + S T G +P T+ PS + P
Sbjct: 419 SSGTSPTTPGGGYSPSTPCNAPPSPSSDTSPTTPGGGNYPPAPTIGNVPPSPSSGTSPST 478
Query: 213 PPNPLSSDPT 242
P SS PT
Sbjct: 479 PGGGCSSSPT 488
>12_02_0342 -
17742326-17742356,17742503-17742621,17743148-17743175,
17743971-17744063,17744517-17744628,17745593-17745729,
17745924-17745958,17746938-17747000
Length = 205
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 132 KSGETLATGFPNVATLSGPSEASKPDAPPNPLSSDPTAHGPSSLIKNFLAFHLP 293
++G TL + P A G +AS+ PP P+S +P S + ++ +P
Sbjct: 32 ENGITLKSQNPTKAEQLGMEQASESCLPPLPISLEPKTSTASKATEPYIQNSIP 85
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 4 PSPDPIVIEQPSSNVSKHHQVQNQAYLTPAHPEKPPSPS 120
P P P E P KH + + Q + P P+KPP S
Sbjct: 60 PPPQPAK-EPPPPTKPKHPKPKQQQHPPPPPPQKPPQGS 97
>05_01_0106 + 702504-702687,702856-703037,703070-703933
Length = 409
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 162 PNVATLSGPSEASKPDAPPNPLSSDPTA 245
P A+ S P AS APP PL DP A
Sbjct: 278 PRAASSSHPG-ASSSSAPPPPLGHDPNA 304
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 186 PSEASKPDAPPNPLSSDPTAHGPSS 260
PS A+ D PNP+S P H P++
Sbjct: 41 PSAAAATDTIPNPISRHPYFHPPAT 65
>03_02_0390 + 8056006-8057502
Length = 498
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 210 APPNPLSSDPTAHGPSSL 263
APP+PLSSD H P SL
Sbjct: 7 APPSPLSSDILPHFPPSL 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,018
Number of Sequences: 37544
Number of extensions: 369701
Number of successful extensions: 1501
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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