Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021266
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 35 0.050
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 31 0.47
AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical ... 31 0.82
Z82084-3|CAB04977.1| 780|Caenorhabditis elegans Hypothetical pr... 30 1.1
U13876-13|AAA21172.3| 370|Caenorhabditis elegans Prion-like-(q/... 29 3.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.3
Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical p... 28 4.4
Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical pr... 28 4.4
U41028-3|AAA82356.2| 159|Caenorhabditis elegans Hypothetical pr... 28 4.4
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 28 5.8
AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical... 28 5.8
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 27 7.6
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 27 7.6
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 27 7.6
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 27 7.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 27 7.6
U13645-6|AAV34802.1| 457|Caenorhabditis elegans Hypothetical pr... 27 7.6
U13645-4|AAA20986.2| 529|Caenorhabditis elegans Hypothetical pr... 27 7.6
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 27 7.6
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 27 7.6
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 27 7.6
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 61 QVQNQAYLTPAH--PEKPPSPSKQG*NPVRLLPPAFQMLRP*AAPRKPQNQ 207
Q Q Q + P H P++PP PS+ NP+ P AAP +PQ+Q
Sbjct: 1203 QQQQQMHQMPLHHLPQQPPPPSQNPQNPLPQPPQVMPTTPTSAAPPQPQSQ 1253
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 9 P*PNCYRTTLV*RLKTSSGSKPSVPYTGSSGETPKP 116
P PN R+TL ++TSSG+ P PY GS +P+P
Sbjct: 191 PPPN--RSTLP-SVETSSGNSPQTPYPGSPEASPQP 223
>AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical
protein ZC178.2 protein.
Length = 1459
Score = 30.7 bits (66), Expect = 0.82
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Frame = +3
Query: 57 SSGSKPSVPYTGS-SGETPKPQ*TRIKSGETLATGFPNVATLSGPSE----ASKPDAPPN 221
S+ + PS T S S ETP T+ G + T PN +T +GPS ++ + P N
Sbjct: 1215 STTAGPSSTVTNSASSETPCNSETQTSDGTSTMT-VPNDSTTAGPSSTVTNSASSETPCN 1273
Query: 222 P------------LSSDPTAHGPSSLIKNFLAFHLPITS 302
+SSD T GPSS + N + P S
Sbjct: 1274 SETQTSDGTSTMTVSSDSTTAGPSSTVTNSASSETPCNS 1312
Score = 30.3 bits (65), Expect = 1.1
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Frame = +3
Query: 57 SSGSKPSVPYTGS-SGETPKPQ*TRIKSGETLATGFPNVATLSGPSE----ASKPDAPPN 221
S+ + PS T S S ETP T+ G + T PN +T +GPS ++ + P N
Sbjct: 1101 STTAGPSSTATNSASSETPCNSETQTSDGTSTMT-VPNDSTTAGPSSTVTNSASSETPCN 1159
Query: 222 P------------LSSDPTAHGPSSLIKNFLAFHLPITS 302
+SSD T GPSS + N + P S
Sbjct: 1160 SETQTSDGTFTMTVSSDSTTAGPSSTVTNSASSETPCNS 1198
Score = 28.7 bits (61), Expect = 3.3
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Frame = +3
Query: 57 SSGSKPSVPYTGS-SGETPKPQ*TRIKSGETLATGFPNVATLSGPSE----ASKPDAPPN 221
S+ + PS T S S ETP T+ G + T PN +T +GPS ++ + P N
Sbjct: 387 STTAGPSSTATNSASSETPCNSETQTSDGTSTMT-VPNDSTTAGPSSTVTNSASSETPCN 445
Query: 222 P------------LSSDPTAHGPSSLIKNFLAFHLPITS 302
+SSD T GPSS N + P S
Sbjct: 446 SETQTSDGTSTMTVSSDSTTPGPSSTATNSASSETPCNS 484
Score = 28.7 bits (61), Expect = 3.3
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Frame = +3
Query: 57 SSGSKPSVPYTGS-SGETPKPQ*TRIKSGETLATGFPNVATLSGPSE----ASKPDAPPN 221
S+ + PS T S S ETP T+ G + T PN +T +GPS ++ + P N
Sbjct: 577 STTAGPSSTATNSASSETPCNSETQTSDGTSTMT-VPNDSTTAGPSSTVTNSASSETPCN 635
Query: 222 P------------LSSDPTAHGPSSLIKNFLAFHLPITS 302
+SSD T GPSS N + P S
Sbjct: 636 SETQTSDGTSTMTVSSDSTTAGPSSTATNSASSETPCNS 674
>Z82084-3|CAB04977.1| 780|Caenorhabditis elegans Hypothetical
protein ZK1053.3 protein.
Length = 780
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +3
Query: 93 SSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLSSDPTAHGPS 257
S TP P T + + L + F N AT + EAS P AP N + P+
Sbjct: 2 SDSNTPNPPGTEERLVQQLDSYFSNTATGNETGEASAPAAPNNAAGTSDQDRPPN 56
>U13876-13|AAA21172.3| 370|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 46
protein.
Length = 370
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 28 EQPSSNVSKHHQVQNQAYLTPAH-PEKPPSPSKQG*NPVRLLPPAFQMLRP 177
+QP V + Q Q P P +PP P + G PV+ Q+++P
Sbjct: 103 QQPQQQVQQQVQQPQQPVQQPQPTPIRPPQPQRSGQQPVQSFESHTQIVQP 153
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/68 (36%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 SGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSG---PSEASKPDAPPNPLS 230
SGS P P GS P P R S TG P G P A P PP P
Sbjct: 252 SGSPPPPPAAGSP---PPP---RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 305
Query: 231 SDPTAHGP 254
S PT P
Sbjct: 306 SPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/68 (36%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 SGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSG---PSEASKPDAPPNPLS 230
SGS P P GS P P R S TG P G P A P PP P
Sbjct: 273 SGSPPPPPAAGSP---PPP---RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 326
Query: 231 SDPTAHGP 254
S PT P
Sbjct: 327 SPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/68 (36%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 SGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSG---PSEASKPDAPPNPLS 230
SGS P P GS P P R S TG P G P A P PP P
Sbjct: 258 SGSPPPPPAAGSP---PPP---RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 311
Query: 231 SDPTAHGP 254
S PT P
Sbjct: 312 SPPTGSLP 319
>Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 326 LNVST-LPFPAQPCLLVAFAQASNSTPQR 409
+N+ T LP PA PC A A + STP +
Sbjct: 162 VNIPTGLPMPASPCTTAASAPSVESTPTK 190
>Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 326 LNVST-LPFPAQPCLLVAFAQASNSTPQR 409
+N+ T LP PA PC A A + STP +
Sbjct: 162 VNIPTGLPMPASPCTTAASAPSVESTPTK 190
>U41028-3|AAA82356.2| 159|Caenorhabditis elegans Hypothetical
protein C25G6.4 protein.
Length = 159
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 221 SFKFRSNSSWALLPHKELFGISSPDHECTFLNRKRLNVSTLPFPAQPCLLVAFAQASNST 400
S KFR + A++ HK + GI + H +N+ + F VA A AS++
Sbjct: 70 SLKFRDKETGAVVLHKAVVGICNGLHSREHVNQSEFDKQEQEFRVNRNFRVA-ADASSTG 128
Query: 401 PQRVWAH 421
P H
Sbjct: 129 PSYTQKH 135
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Frame = +1
Query: 4 PSP-DPIVIEQPSSNVSKHHQVQNQAYLTPAHPEKPPSPS-KQG*NPVRLLPPAFQMLRP 177
P P DP QPS S+ HQ P P + P PS + +P PP+ + P
Sbjct: 124 PGPVDPSEDPQPSVEPSEDHQPSGPPSPGPVDPSEDPQPSVEPSEDPQPSGPPSPGPVDP 183
Query: 178 *AAPRKPQNQTXXXXXXXXXXXXMGPP 258
P+ + + GPP
Sbjct: 184 SEDPQPSGSSSPGPVDPSDEPSPSGPP 210
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.9 bits (59), Expect = 5.8
Identities = 25/64 (39%), Positives = 30/64 (46%)
Frame = +1
Query: 16 PIVIEQPSSNVSKHHQVQNQAYLTPAHPEKPPSPSKQG*NPVRLLPPAFQMLRP*AAPRK 195
P+++ QPS Q QNQ PAHP P PS N +R LP +L P
Sbjct: 453 PLILLQPS-------QQQNQLRSLPAHPLILPRPSLP-LNQLRSLPAHPLIL---LQPSL 501
Query: 196 PQNQ 207
PQNQ
Sbjct: 502 PQNQ 505
>AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical
protein F32D1.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = +3
Query: 54 TSSGSKPSVPYTG-SSGETPKPQ*TRIKSGETLATGFPNVATLSG---PSEASKPDAPPN 221
TS+ S+PS G S T K + + G +T SG PS P P
Sbjct: 208 TSNTSEPSTSTQGVSPSRTSKISKKKAHQAGLHSKGSSEDSTDSGESKPSSKQPPKKSPK 267
Query: 222 PLSSDPTAHGPS 257
+DP A GPS
Sbjct: 268 SNKNDPNAPGPS 279
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 435 SLIPFLMVP*NALKASAQNTSKLSPEFELSRLLSPWRTSQHHR 563
++IP + L+ A+ TS +PE S ++P +T+QH+R
Sbjct: 348 TMIPVQITCPYCLEKGAETTSTSAPEPIASTKIAPVQTAQHNR 390
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 435 SLIPFLMVP*NALKASAQNTSKLSPEFELSRLLSPWRTSQHHR 563
++IP + L+ A+ TS +PE S ++P +T+QH+R
Sbjct: 348 TMIPVQITCPYCLEKGAETTSTSAPEPIASTKIAPVQTAQHNR 390
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +3
Query: 165 NVATLSGPSEASKPDAPPNPLSSDPT---AHGPSSLIKNFLAFHLPITS 302
N S PS SKP PPN P+ AH SS + + H T+
Sbjct: 792 NPKPFSHPSANSKPPTPPNRRRHPPSASVAHSQSSFVDESPSQHFVTTT 840
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +3
Query: 165 NVATLSGPSEASKPDAPPNPLSSDPT---AHGPSSLIKNFLAFHLPITS 302
N S PS SKP PPN P+ AH SS + + H T+
Sbjct: 792 NPKPFSHPSANSKPPTPPNRRRHPPSASVAHSQSSFVDESPSQHFVTTT 840
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 435 SLIPFLMVP*NALKASAQNTSKLSPEFELSRLLSPWRTSQHHR 563
++IP + L+ A+ TS +PE S ++P +T+QH+R
Sbjct: 348 TMIPVQITCPYCLEKGAETTSTSAPEPIASTKIAPVQTAQHNR 390
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 435 SLIPFLMVP*NALKASAQNTSKLSPEFELSRLLSPWRTSQHHR 563
++IP + L+ A+ TS +PE S ++P +T+QH+R
Sbjct: 348 TMIPVQITCPYCLEKGAETTSTSAPEPIASTKIAPVQTAQHNR 390
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 43 NVSKHHQVQNQAYLTPAHPEKPPSPSKQ 126
NV K H +++ + P H K P+P +Q
Sbjct: 22 NVKKDHPLESSSNSKPTHQPKSPAPYRQ 49
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = +1
Query: 76 AYLTPAHPEKPPSPSKQG*NPVRLLPPAFQMLRP*AAPRKPQNQTXXXXXXXXXXXXMGP 255
+Y TPA P P G P R PP AP +P Q + P
Sbjct: 551 SYSTPAAPPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPP 610
Query: 256 PP 261
PP
Sbjct: 611 PP 612
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = +1
Query: 76 AYLTPAHPEKPPSPSKQG*NPVRLLPPAFQMLRP*AAPRKPQNQTXXXXXXXXXXXXMGP 255
+Y TPA P P G P R PP AP +P Q + P
Sbjct: 377 SYSTPAAPPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPP 436
Query: 256 PP 261
PP
Sbjct: 437 PP 438
>U13645-6|AAV34802.1| 457|Caenorhabditis elegans Hypothetical
protein C05D10.1c protein.
Length = 457
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 156 GFPN-VATLSGPSEASKPDAPPNPLSSDP 239
GFP VA+ E+S P PP PLSS P
Sbjct: 124 GFPPPVASYYQRKESSNPLVPPTPLSSIP 152
>U13645-4|AAA20986.2| 529|Caenorhabditis elegans Hypothetical
protein C05D10.1a protein.
Length = 529
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 156 GFPN-VATLSGPSEASKPDAPPNPLSSDP 239
GFP VA+ E+S P PP PLSS P
Sbjct: 196 GFPPPVASYYQRKESSNPLVPPTPLSSIP 224
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/69 (27%), Positives = 23/69 (33%)
Frame = +3
Query: 51 KTSSGSKPSVPYTGSSGETPKPQ*TRIKSGETLATGFPNVATLSGPSEASKPDAPPNPLS 230
K + G P P + KP PN SGP+ S P+ P
Sbjct: 937 KPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGP 996
Query: 231 SDPTAHGPS 257
SDP PS
Sbjct: 997 SDPVKPSPS 1005
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 435 SLIPFLMVP*NALKASAQNTSKLSPEFELSRLLSPWRTSQHHR 563
++IP + L+ A+ TS +PE S ++P +T+QH+R
Sbjct: 348 TMIPVQITCPYCLEKGAETTSTSAPEPIASTKIAPVQTAQHNR 390
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 435 SLIPFLMVP*NALKASAQNTSKLSPEFELSRLLSPWRTSQHHR 563
++IP + L+ A+ TS +PE S ++P +T+QH+R
Sbjct: 348 TMIPVQITCPYCLEKGAETTSTSAPEPIASTKIAPVQTAQHNR 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,489,544
Number of Sequences: 27780
Number of extensions: 282318
Number of successful extensions: 1320
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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