Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021265X
(486 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 182 3e-45
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 67 2e-10
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 66 3e-10
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 62 5e-09
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 62 9e-09
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 55 1e-06
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 47 2e-04
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 46 3e-04
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 43 0.003
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 42 0.010
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 41 0.013
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 38 0.16
UniRef50_Q5BRV7 Cluster: SJCHGC07245 protein; n=1; Schistosoma j... 37 0.28
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 36 0.37
UniRef50_Q2W8H3 Cluster: Response regulator; n=2; Magnetospirill... 35 1.1
UniRef50_A7BV58 Cluster: Putative uncharacterized protein; n=1; ... 33 2.6
UniRef50_A1Z722 Cluster: CG30494-PA; n=2; Drosophila melanogaste... 33 3.4
UniRef50_Q3JSB8 Cluster: Putative uncharacterized protein; n=2; ... 33 4.5
UniRef50_A5BNC6 Cluster: Putative uncharacterized protein; n=2; ... 33 4.5
UniRef50_A5AV32 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q6A6U5 Cluster: Putative ABC transporter-associated per... 32 6.0
UniRef50_A6W9D8 Cluster: Peptidase domain protein precursor; n=2... 32 6.0
UniRef50_Q5TUN5 Cluster: ENSANGP00000027378; n=2; Culicidae|Rep:... 32 6.0
UniRef50_P55385 Cluster: Uncharacterized protein y4cC; n=5; Prot... 32 6.0
UniRef50_Q4BX28 Cluster: Putative uncharacterized protein; n=1; ... 32 7.9
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 182 bits (444), Expect = 3e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +3
Query: 3 TAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSYDFSAYRSYQKRHHR 182
TAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSYDFSAYRSYQKRHHR
Sbjct: 1101 TAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSYDFSAYRSYQKRHHR 1160
Query: 183 MTNFKFDPAHTRAPRSTSAKPLPA 254
MTNFKFDPAHTRAPRSTSAKPLPA
Sbjct: 1161 MTNFKFDPAHTRAPRSTSAKPLPA 1184
Score = 162 bits (393), Expect = 4e-39
Identities = 75/76 (98%), Positives = 75/76 (98%)
Frame = +2
Query: 257 DTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIE 436
DTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISS EPTDTAIE
Sbjct: 1186 DTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSAEPTDTAIE 1245
Query: 437 PVYPGCDYKTVAALMM 484
PVYPGCDYKTVAALMM
Sbjct: 1246 PVYPGCDYKTVAALMM 1261
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 66.9 bits (156), Expect = 2e-10
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 DTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLP-TKVDISSVEPTDTAI 433
D SD++ +AP + PR+DT LPETRRPLHFD+PS P S P+ TA
Sbjct: 1256 DRSDVLSWAPIAVGDGETNAPRIDTSFLPETRRPLHFDLPSFRPQAPPPPSDPAPSGTAF 1315
Query: 434 EPVYPGCDYKTVAA 475
EPVYPG ++ + A
Sbjct: 1316 EPVYPGETFENLVA 1329
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 66.5 bits (155), Expect = 3e-10
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +2
Query: 257 DTSDIII-FAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTA- 430
D D+++ AP + S P++ TH LPETRRPLHFD+ S++P S V+P D A
Sbjct: 1337 DLPDLLVPEAPVILGSGESNAPQVSTHFLPETRRPLHFDVASAVPEPAKPSGVDPLDLAS 1396
Query: 431 IEPVYPGCDYKTVA 472
I PVYPG ++ +A
Sbjct: 1397 ITPVYPGESFENLA 1410
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 62.5 bits (145), Expect = 5e-09
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +2
Query: 317 PRLDTHHLPETRRPLHFDIPSSLP-TKVDISSVEPTDTAIEPVYPGCDYKTVAA 475
P++ TH LPETRRPLH+DIPS++P + S EPT EPVYPG ++ +AA
Sbjct: 1414 PQVSTHFLPETRRPLHWDIPSAIPESATRPDSTEPTTCHPEPVYPGETFENLAA 1467
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 61.7 bits (143), Expect = 9e-09
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = +2
Query: 281 APELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDIS-SVEPTDTAIEPVYPGCD 457
AP L D ++A P++ TH LPETRRPLHFDIPS+ D + + + AIEPVYPG
Sbjct: 1224 APILGDGSANA-PQVSTHFLPETRRPLHFDIPSARHQVADHPLAPDHSACAIEPVYPGES 1282
Query: 458 YKTVAALMM 484
++++A+L +
Sbjct: 1283 FESLASLFL 1291
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 54.8 bits (126), Expect = 1e-06
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 320 RLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMM 484
RLDTH LP +R PLHFD+P ++ +SV+P PVYPG + ++AA +
Sbjct: 1301 RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYPGEFFDSLAAFFL 1355
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 47.2 bits (107), Expect = 2e-04
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 302 QSSAIPRLDTHHLPETRRPLHFD-IPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAAL 478
Q A PRLDTH LP TR PL + +P+ L + +T PVYPG +++ +AA
Sbjct: 1324 QGQADPRLDTHFLPPTRLPLQSELLPAQLSQTTKPTDSFTNNTPFTPVYPGENFENLAAF 1383
Query: 479 MM 484
+
Sbjct: 1384 FL 1385
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 46.4 bits (105), Expect = 3e-04
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 266 DIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPT-DTAIEPV 442
D+++ P L L + PRL+ HLP TR PLH D+ ++P+ SSV+ T I P
Sbjct: 1280 DVLVSNPVL--LGETLDPRLEVLHLPPTRLPLHLDLLPTVPSSSSFSSVDHLFPTPISPA 1337
Query: 443 YPGCDYKTVAALMM 484
G ++ +AA +
Sbjct: 1338 ICGYTFENLAAFFL 1351
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 43.2 bits (97), Expect = 0.003
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 320 RLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAA 475
RL T HLP TR PLHFD+ S P+ V SS ++ + G ++ +AA
Sbjct: 1227 RLTTLHLPPTRLPLHFDLESCNPSTVSTSSTSNSEVPFTHAFLGESFEELAA 1278
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 41.5 bits (93), Expect = 0.010
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 317 PRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAA 475
P +D LP RRPLH ++ S++ + S T AI VYPG ++ +AA
Sbjct: 1232 PEVDDTFLPTWRRPLHRNLASAVHSNCPAQSTHVTPAAITAVYPGESFENLAA 1284
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 41.1 bits (92), Expect = 0.013
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 260 TSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDIS-SVEPTDTAIE 436
+ D+I+ L+ S RL HLP TR LH DI + P+ S EP +
Sbjct: 1185 SKDVIVNNQALYG--ESLERRLSVLHLPPTRMTLHSDINITAPSSSSFQPSDEPVPSDHT 1242
Query: 437 PVYPGCDYKTVAA 475
VYPG D+ T+AA
Sbjct: 1243 AVYPGFDFFTLAA 1255
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 37.5 bits (83), Expect = 0.16
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 266 DIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPT-DTAIEPV 442
D++ F+ +F S+ RLD HLP TR L D+ S LP+ S + T P
Sbjct: 1183 DVVHFSSSVFG--SNEERRLDVLHLPPTRLILQSDLVSGLPSDPSTSLCDAIFGTPFTPA 1240
Query: 443 YPGCDYKTVAALMM 484
YP ++ +AA +
Sbjct: 1241 YPEETFENLAAFFL 1254
>UniRef50_Q5BRV7 Cluster: SJCHGC07245 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07245 protein - Schistosoma
japonicum (Blood fluke)
Length = 82
Score = 36.7 bits (81), Expect = 0.28
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 290 LFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDI 403
LF+L +S IP +PE+ PL F + S+ PTKVD+
Sbjct: 8 LFNLVTSLIPESSLSKIPESPMPLIFGLSSNWPTKVDL 45
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 36.3 bits (80), Expect = 0.37
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 317 PRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVA 472
PR++ + ETR PL ++ +LP++ + S + E VYPG D + +A
Sbjct: 1412 PRVNPTFVAETRLPLQSELAPTLPSQPEPSPTYHSPATFETVYPGVDGEALA 1463
>UniRef50_Q2W8H3 Cluster: Response regulator; n=2;
Magnetospirillum|Rep: Response regulator -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 387
Score = 34.7 bits (76), Expect = 1.1
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 109 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSG 8
+L+ DV+S + P SF LR L+GWSL +A+ G
Sbjct: 144 ALMNDVLSMVAPESFQRSLR-LRGWSLQLAASMG 176
>UniRef50_A7BV58 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 402
Score = 33.5 bits (73), Expect = 2.6
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 260 TSDIIIFAPELFDLQSSAIPRLDTHHLP-ETRRPLHFDIPSSLPTKVDISSVEPTDTAIE 436
TS + P + + + ++P+ D +P E +P+ IP+++PTK +++ E T T
Sbjct: 81 TSPPLEIVPAITETSNRSVPKTDDISVPTEKSKPVDTKIPATVPTKSIVATTELTATQST 140
Query: 437 PVYPGCDYKTV 469
V P + TV
Sbjct: 141 TV-PAAEPTTV 150
>UniRef50_A1Z722 Cluster: CG30494-PA; n=2; Drosophila
melanogaster|Rep: CG30494-PA - Drosophila melanogaster
(Fruit fly)
Length = 2262
Score = 33.1 bits (72), Expect = 3.4
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 245 TTCYDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTD 424
+T D + P + Q+ + LD H LPE P +P+SLPT + I + +PTD
Sbjct: 1443 STTIDEQPSAVLEPLVLICQAEST-NLD-HELPENLVPQGQSVPASLPTNLTIQT-QPTD 1499
Query: 425 TAIEP 439
+P
Sbjct: 1500 LETQP 1504
>UniRef50_Q3JSB8 Cluster: Putative uncharacterized protein; n=2;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 1710b)
Length = 1195
Score = 32.7 bits (71), Expect = 4.5
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = -3
Query: 475 SCHSFVVAAGIDRFYGGVCRFNTT--NVHFGRERGRNIEMERTTGFRKMMSVKSRDG*GL 302
+C + A ++R GG R V R GR + R G R + + R +
Sbjct: 209 ACRAARAAHPVERDVGGRLRARARAGGVRMARGHGRRVATRRARGDRVLRARADRARLSV 268
Query: 301 EVKKFRCENYYVRGVI--AGSGLADVERGALV 212
V++FR + GV+ G+GL RG V
Sbjct: 269 LVRRFRAHERHRGGVVHGRGAGLGGAVRGGRV 300
>UniRef50_A5BNC6 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1272
Score = 32.7 bits (71), Expect = 4.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 272 IIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPS-SLPTKVDISSVEPTDTAIEPVYP 448
+IF F QSS+ P + HLP + P + PS S P+ +SS T +I P+ P
Sbjct: 732 VIFHESSFPFQSSSXPSSPSPHLPSS-TPALINSPSLSAPSSPAVSSPIITSNSIPPLIP 790
>UniRef50_A5AV32 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1146
Score = 32.7 bits (71), Expect = 4.5
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 230 YICQ--TTTCYDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPS-SLPTKVD 400
Y+C +T+ S +IF F QSS+ P HLP + P + PS S P+ +
Sbjct: 600 YLCLDVSTSRIYISKNVIFHESSFPFQSSSPPPSPPPHLPSS-TPALINSPSLSAPSSLT 658
Query: 401 ISSVEPTDTAIEPVYP 448
+SS T +I P+ P
Sbjct: 659 VSSPIITSDSIPPLIP 674
>UniRef50_Q6A6U5 Cluster: Putative ABC transporter-associated
permease; n=1; Propionibacterium acnes|Rep: Putative ABC
transporter-associated permease - Propionibacterium
acnes
Length = 779
Score = 32.3 bits (70), Expect = 6.0
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Frame = +3
Query: 3 TAPLFEAMLNDQPFNFLNTFANELGGMELI-------TSPIKER-KTILRGGSYDFSAYR 158
TA ++Q FN T +LG + I T P K ++ RG Y +
Sbjct: 566 TAGSLRVTTDEQAFNTEITVPRDLGWLGQIKVIGHGNTPPAKSSDSSVSRGFLYVGLSPN 625
Query: 159 SYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPAMT 260
+H T DP++ APR PLPA T
Sbjct: 626 QEDTAYHWATTHHIDPSYVMAPRIAPKVPLPAAT 659
>UniRef50_A6W9D8 Cluster: Peptidase domain protein precursor; n=2;
Kineococcus radiotolerans SRS30216|Rep: Peptidase domain
protein precursor - Kineococcus radiotolerans SRS30216
Length = 289
Score = 32.3 bits (70), Expect = 6.0
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = +2
Query: 182 DDQF*IRSSSYQGSSFYICQTTTCYDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPL 361
DD++ + + Q +SF++ ++T+ + + P + D SS T+ LPET R
Sbjct: 76 DDRYVFDAKAGQTASFHLARSTSAQTWTLVGPSGPAVHDAHSSRQSDF-TYRLPETGR-Y 133
Query: 362 HFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
+ DI S+ P+ + P T +PV P
Sbjct: 134 YVDIVSTRPSSYRLDLSIPAST--KPVKP 160
>UniRef50_Q5TUN5 Cluster: ENSANGP00000027378; n=2; Culicidae|Rep:
ENSANGP00000027378 - Anopheles gambiae str. PEST
Length = 2040
Score = 32.3 bits (70), Expect = 6.0
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = -2
Query: 383 ERKEYRNGEDDGFPEDDECQVSGWLRTGGQKVQVRKLLCQRCHSR*WFGRCRTRSPG 213
E +E +DD EDDE + R+GGQ+ ++R QR H R RC + S G
Sbjct: 1818 EEEEEEEDDDDEDEEDDEDEEENGQRSGGQR-RLRANRQQRAHER--RERCLSNSEG 1871
>UniRef50_P55385 Cluster: Uncharacterized protein y4cC; n=5;
Proteobacteria|Rep: Uncharacterized protein y4cC -
Rhizobium sp. (strain NGR234)
Length = 517
Score = 32.3 bits (70), Expect = 6.0
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 269 IIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPV-Y 445
+I+ A + + +P+LDT+ PET PLH + S K +I V + + Y
Sbjct: 417 LILDAQTAYIWTTGYVPQLDTYIGPETPNPLHVTVTRSKDAKPEIRDVLSDIMGLTKINY 476
Query: 446 PGCDY 460
C++
Sbjct: 477 NSCNF 481
>UniRef50_Q4BX28 Cluster: Putative uncharacterized protein; n=1;
Crocosphaera watsonii WH 8501|Rep: Putative
uncharacterized protein - Crocosphaera watsonii
Length = 403
Score = 31.9 bits (69), Expect = 7.9
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +3
Query: 12 LFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSYDFSAYRSYQKR 173
LF+ +L+DQ F +N + G +ELI I + LRG S + +A++ ++ +
Sbjct: 143 LFKDLLDDQGFCLINYYEASGGFLELILKLIHAKTKTLRGLSPEENAWQLFESK 196
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,089,022
Number of Sequences: 1657284
Number of extensions: 10375314
Number of successful extensions: 29344
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 28382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29332
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -