Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021265X
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    27   1.1  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    27   2.0  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   2.6  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    26   3.5  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    26   3.5  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   3.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   6.1  
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    25   6.1  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   8.0  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   8.0  

>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 260 TSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIP 376
           +S  + +  E F LQ   + RL  H  P T R  H D P
Sbjct: 128 SSSAVDWLSERFGLQMDQLSRLAGHSEPRTHRGTHPDYP 166


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 353 DGFPEDDECQVSGWL-RTGGQKVQVRKLLCQRCHSR*WFGRC 231
           DG P+ DEC++  +  R   + V+ RKL+  R  ++   G C
Sbjct: 24  DGMPKKDECRLPSYSERAITKPVEARKLIRNRLMTKSTTGWC 65


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 99  PIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHTRAP 224
           P+ ER T+       ++A  S QKR+ R+T    D AH  +P
Sbjct: 170 PLLERNTL-------YAAKASIQKRYERLTKRGVDQAHESSP 204


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 427 GVCRFNTTNVHFGRERGRNIEME 359
           G  R+ + N H GRE+ R  ++E
Sbjct: 183 GTARYMSINTHLGREQSRRDDLE 205


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 427 GVCRFNTTNVHFGRERGRNIEME 359
           G  R+ + N H GRE+ R  ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 427 GVCRFNTTNVHFGRERGRNIEME 359
           G  R+ + N H GRE+ R  ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 323 LDTHHLPETRRPLHFDIPSSLPTKVDISSVE 415
           L  HHL  +  PL  DIP +   KVD+ S+E
Sbjct: 490 LRDHHLFSSCFPLA-DIPRNAAGKVDLKSIE 519


>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 MTNFKFDPAHTRAPRSTSAKPLPAMT 260
           +TNF   PA + +  +  AKPLP +T
Sbjct: 107 LTNFTETPAVSTSASNVIAKPLPPVT 132


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 380 RKEYRNGEDDGFP-EDDECQVSGWLRT 303
           R EYR   DDG P  DDE +   + R+
Sbjct: 270 RDEYRRSRDDGRPSHDDEYRRDAYSRS 296


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 403 NVHFGRERGRNIEMERTTGFRKMMSVKSRD 314
           N H GR   R+  +  ++G R   SV SRD
Sbjct: 84  NNHVGRWANRHSNVSSSSGSRGRSSVSSRD 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,897
Number of Sequences: 5004
Number of extensions: 42833
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)