Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021265X
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0200 - 23171803-23171906,23172304-23173951                       29   2.0  
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    29   2.0  
09_04_0354 + 16919133-16919235,16920145-16920355,16920478-169205...    28   4.6  
03_05_0615 + 26137785-26138593,26139307-26141368                       27   6.0  
03_06_0402 + 33681451-33681706,33682800-33682936,33683103-336831...    27   8.0  
03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542...    27   8.0  

>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 31  MTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTF 147
           +T P+TS T L+       S   R    RP +V GLM F
Sbjct: 294 LTRPATSRTSLEKRYSFIQSEERRFVESRPEWVGGLMDF 332


>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 275 LLCQRCHSR*WFGRCRTRSPGMSWIEF 195
           L  Q C    WFG C  R+  + WI+F
Sbjct: 396 LFAQFCLHALWFGNCHIRAIAVLWIDF 422


>09_04_0354 +
           16919133-16919235,16920145-16920355,16920478-16920544,
           16920767-16920808
          Length = 140

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 368 RNGEDDGFPEDDECQVSGWLRTGGQKVQVRKLLCQRCHSR 249
           R G   G+P+  E      LR   QK    KL+C+RC++R
Sbjct: 74  RGGSRGGYPKGIEPN----LRELAQKYNENKLVCRRCYAR 109


>03_05_0615 + 26137785-26138593,26139307-26141368
          Length = 956

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 51  LNTFANELGGMELITSPIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDP 206
           +N    +L  ME + S +KE +  +R  +YD          HHR++    DP
Sbjct: 43  MNALLLKLADMEELDSQLKEWRNKVRELAYDVEDCIDAFAHHHRLSRGDADP 94


>03_06_0402 +
           33681451-33681706,33682800-33682936,33683103-33683153,
           33683798-33683866,33684286-33684428,33685464-33685521,
           33685823-33685938,33686298-33686391,33686950-33686961
          Length = 311

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = -3

Query: 415 FNTTNVHFGRERGRNIEMERTTGFRKMMSVKSRDG*GLEVKKFRCENYYVRGVIAGS 245
           +NT +  FG  +  ++ +ER TG+ K+++V++     + +K  R   ++++  I  S
Sbjct: 107 YNTFS-DFGHVKDLHLNLERRTGYAKLLAVRASHIQLINLKGMRNVYFHIKSRICTS 162


>03_05_0903 -
           28652447-28653346,28653890-28654056,28654075-28654264,
           28654916-28655210,28655514-28655760,28656017-28656443
          Length = 741

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 430 GGVCRFNTTNVHFGRERGRNIEMERT 353
           GG C     ++ FG +RGR  EM+R+
Sbjct: 178 GGECDLQDQSMAFGADRGRFTEMKRS 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,099
Number of Sequences: 37544
Number of extensions: 302369
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)