Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021265X
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.88 
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)                       30   1.2  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   29   2.7  
SB_29977| Best HMM Match : IL8 (HMM E-Value=1)                         28   3.6  
SB_47162| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               27   6.2  
SB_35202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_26299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 356 PLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           P +  I ++ PT + I++  PTD +IE  YP
Sbjct: 97  PNYLSIVTAYPTDLSIATAYPTDLSIETAYP 127



 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           T  P    I ++ PT + I +  PTD +IE  YP
Sbjct: 214 TANPNDLSIVTAYPTDLRIVTAYPTDLSIETAYP 247



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 344 ETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           ET  P    I ++ PT + I +  PTD +I   YP
Sbjct: 123 ETAYPTDLYIVTAYPTDLSIVTAYPTDLSIVTAYP 157



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAA 475
           T  P    I ++ PT + I +  PTD +I   YP  D + V A
Sbjct: 144 TAYPTDLSIVTAYPTDLSIVTAYPTDLSIVTAYP-TDLRIVTA 185


>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
          Length = 291

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           T  P    I ++ PT + I +  PTD +IE  YP
Sbjct: 44  TAYPTDLSIATAYPTDLSIVTAYPTDLSIETAYP 77



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           T  P +  I ++ PT + I++  PTD +I   YP
Sbjct: 34  TAYPNYLSIVTAYPTDLSIATAYPTDLSIVTAYP 67



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 344 ETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           ET  P    I ++ PT + I +  PTD +I   YP
Sbjct: 73  ETAYPTDLCIVTAYPTDLSIVTAYPTDLSIVTAYP 107



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAA 475
           T  P    I ++ PT + I +  PTD +I   YP  D + V A
Sbjct: 84  TAYPTDLSIVTAYPTDLSIVTAYPTDLSIVTTYP-TDLRIVTA 125



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           T  P    I ++ PT + I +  PTD  I   YP
Sbjct: 54  TAYPTDLSIVTAYPTDLSIETAYPTDLCIVTAYP 87


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +2

Query: 218 GSSFYICQTTTCYDTSDIIIFAPELFD-LQSS-AIP-RLDTHHLPETRRPLHFDIPSSLP 388
           GS   + QTT   +TS  I+    L   L S+  +P  L ++    T  PL+  +P+ LP
Sbjct: 266 GSQTSLNQTTPPNETSTEILSNETLSTGLPSNQTLPTELSSNETFSTELPLNQTLPNELP 325

Query: 389 TKVDISSVEPTDTAIEPVYP 448
           +   +S+V P++  I    P
Sbjct: 326 SNETLSTVAPSNETISTESP 345


>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
          Length = 521

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 100 GDVMSSMPPSSFANVLRKLKGWSLSIASKS 11
           G+V  S PP+S + V + ++GW+L    K+
Sbjct: 400 GNVAESAPPTSSSPVCQAVQGWALKTTHKA 429


>SB_47162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 377 KEYRN-GEDDGFPEDDECQVSGWLRTGGQK 291
           ++YRN G   G   D   +  GWLR G  K
Sbjct: 37  RDYRNNGHTKGTSNDKSIRYGGWLRKGSSK 66


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 144 FSAYRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPAMTPLT**FSHLNFLTSSPQ---P 314
           ++AY +  ++  +  + K  P+ T++  ++S KP P  T       H+N   S PQ   P
Sbjct: 495 YNAYSALCRKEKKPQSEKKTPSETKSALTSSKKPSPLATKPPSSAGHVNPPPSRPQTHHP 554

Query: 315 SR 320
           SR
Sbjct: 555 SR 556


>SB_35202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 448
           T  P +  I ++ PT + I +  PTD +I   YP
Sbjct: 44  TAYPNYLSIVTAYPTDLSIVTAYPTDLSIVTAYP 77



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 347 TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAA 475
           T  P    I ++ PT + I +  PTD +I   YP  D + V A
Sbjct: 134 TAYPTDLSIVTAYPTDLSIVTAYPTDLSIVTAYP-TDRRIVTA 175


>SB_26299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 114 KTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPL 248
           KT++RGG+ D  +   + +    +  FK +  ++ +P S    PL
Sbjct: 157 KTVIRGGTVDTRSKLLFSRTKELLETFKSEAKNSTSPISYILSPL 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,064
Number of Sequences: 59808
Number of extensions: 349789
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)