Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021265X
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 2.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 2.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 2.4
U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 27 5.5
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 27 5.5
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 27 7.2
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 27 9.5
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 27 9.5
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 27 9.5
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 383 LPTKVDISSVEPTDTAIEPVYP 448
LPT++D + PTD A PVYP
Sbjct: 2525 LPTEIDAAQSLPTDDAGMPVYP 2546
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 383 LPTKVDISSVEPTDTAIEPVYP 448
LPT++D + PTD A PVYP
Sbjct: 2588 LPTEIDAAQSLPTDDAGMPVYP 2609
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 383 LPTKVDISSVEPTDTAIEPVYP 448
LPT++D + PTD A PVYP
Sbjct: 2588 LPTEIDAAQSLPTDDAGMPVYP 2609
>U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical
protein F44A2.3 protein.
Length = 574
Score = 27.9 bits (59), Expect = 4.1
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Frame = +3
Query: 27 LNDQPFNFLNTFANELG-------GMELITSPIKERKTILRGGSYDFSAYRSYQKRHHRM 185
+NDQP+ N E G M L+T I ++ + G + + +R+
Sbjct: 148 VNDQPYLRFNECRIENGIVSARVANMGLLTDTINQKFGSVLSGQSRLQLEEAICEHMNRL 207
Query: 186 TNFKFDPAHTRAPRSTSAKPL 248
T F R PRS SAK L
Sbjct: 208 TQQHFSTRLARIPRSLSAKEL 228
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 25 CSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTFQPTEA 162
CS P S MN+E W S S +R V LM P A
Sbjct: 254 CSTPAPPKESLPTGMNVEEWGSFLIASNMDREEIVRRLMAHDPEMA 299
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 25 CSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTFQPTEA 162
CS P S MN+E W S S +R V LM P A
Sbjct: 254 CSTPAPPKESLPTGMNVEEWGSFLIASNMDREEIVRRLMAHDPEMA 299
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 353 DGFPEDDECQVSGWLRTGGQKVQVRKLLCQRCHSR*WFGRCRTRSPG 213
DGFP +++ SGW + G KV + +L C RC R G
Sbjct: 87 DGFPRNED-NWSGWNKQMGGKVNEQFVLFLSCPVDVCIDRCLHRGQG 132
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical
protein K07C10.1 protein.
Length = 851
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 198 FDPAHTRAPRSTSAKPLPAMTPLT**FSHLNFLTSSPQPSRDLTLIIFRK 347
FDP+ T S L + T + +S LNFL+S P D + F +
Sbjct: 498 FDPSKTFPSDSKLVDSLASFTSIQVEYSPLNFLSSVPDLKNDTDVANFNE 547
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 25 CSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFF 126
C+MTNP S ++L L S S N+ P F
Sbjct: 650 CNMTNPLFSDSYLDFCLRNSTSFLATSYNDTPIF 683
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 287 ELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTK 394
E F + S++ +L +++PE PL +D P K
Sbjct: 7 EFFTISPSSLKKLVCNYIPEELLPLEWDCTDKNPVK 42
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 25 CSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFF 126
C+MTNP S ++L L S S N+ P F
Sbjct: 650 CNMTNPLFSDSYLDFCLRNSTSFLATSYNDTPIF 683
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,656,065
Number of Sequences: 27780
Number of extensions: 251729
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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